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BioLiP
Download all results in tab-seperated text for 90 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1cul:A (2.4) BS03 3PO 4.6.1.1 GO:0009190 ... P30803 11087399
    2 1cul:B (2.4) BS02 3PO 4.6.1.1 GO:0009190 ... P26769 11087399
    3 1f5a:A (2.5) BS04 3PO 2.7.7.19 GO:0003723 ... P25500 10944102
    4 1wpl:A (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    5 1wpl:A (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    6 1wpl:B (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    7 1wpl:B (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    8 1wpl:C (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    9 1wpl:D (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    10 1wpl:D (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    11 1wpl:E (2.8) BS02 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    12 1wpl:E (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    13 1wpl:F (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    14 1wpl:F (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    15 1wpl:G (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    16 1wpl:G (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    17 1wpl:H (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    18 1wpl:H (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    19 1wpl:I (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    20 1wpl:I (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    21 1wpl:J (2.8) BS02 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    22 1wpl:J (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    23 2hpm:A (3.7) BS05 3PO 2.7.7.7 GO:0003824 ... Q9XDH5 16959569
    24 2px8:A (2.2) BS02 3PO 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... P05769 17622627
    25 2px8:B (2.2) BS03 3PO 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... P05769 17622627
    26 3ci3:A (1.11) BS01 3PO 2.5.1.17 GO:0005515 ... Q50EJ2 18452306
    27 3otb:A (2.95) BS04 3PO 2.7.7.79 GO:0000049 ... Q9NWX6 21059936
    28 3otb:B (2.95) BS01 3PO 2.7.7.79 GO:0000049 ... Q9NWX6 21059936
    29 3tvl:A (2.3) BS01 3PO 3.6.1.28 GO:0000287 ... Q9BU02 23707715 PDBbind: -logKd/Ki=4.00, Kd<0.1mM
    30 3tvl:B (2.3) BS01 3PO 3.6.1.28 GO:0000287 ... Q9BU02 23707715
    31 4odj:A (1.6) BS02 3PO N/A GO:0004478 ... N/A N/A
    32 4tnx:A (2.31) BS04 3PO 3.1.5.- N/A Q9Y3Z3 25267621
    33 4wyw:A (1.8) BS01 3PO 2.7.7.48
    3.4.22.28
    3.4.22.46
    3.6.1.15    		 GO:0003723 ... P03311 25903341
    34 5a5y:A (1.92) BS02 3PO 3.6.1.-
    3.6.1.25    		 GO:0005524 ... Q9SIY3 26221030
    35 5a5y:B (1.92) BS02 3PO 3.6.1.-
    3.6.1.25    		 GO:0005524 ... Q9SIY3 26221030
    36 5a60:A (1.82) BS03 3PO 3.6.1.25 GO:0016787 ... P30871 26221030
    37 5a61:A (1.5) BS01 3PO 3.6.1.25 GO:0016787 ... P30871 26221030
    38 5a66:A (2.05) BS01 3PO 3.6.1.-
    3.6.1.25    		 GO:0005524 ... Q9SIY3 26221030
    39 5a66:B (2.05) BS01 3PO 3.6.1.-
    3.6.1.25    		 GO:0005524 ... Q9SIY3 26221030
    40 5a67:A (1.3) BS02 3PO 3.6.1.-
    3.6.1.25    		 GO:0005524 ... Q9SIY3 26221030
    41 5mza:A (2.78) BS01 3PO ? GO:0016020 ... Q8IHM0 28279348
    42 5n95:A (2.6) BS01 3PO 2.7.7.48
    3.4.22.28
    3.4.22.46
    3.6.1.15    		 GO:0003723 ... P03311 28460010
    43 5t8s:A (1.7) BS04 3PO 2.5.1.6 GO:0000287 ... Q5FAC0 N/A
    44 5t8s:B (1.7) BS02 3PO 2.5.1.6 GO:0000287 ... Q5FAC0 N/A
    45 6d5x:A (2.4) BS02 3PO 2.5.1.- N/A Q96EY8 30282455
    46 6d5x:C (2.4) BS02 3PO 2.5.1.- N/A Q96EY8 30282455
    47 6knl:A (2.32) BS02 3PO 2.7.7.9 GO:0003983 ... X2KZJ9 N/A
    48 6knl:A (2.32) BS03 3PO 2.7.7.9 GO:0003983 ... X2KZJ9 N/A
    49 6knl:B (2.32) BS02 3PO 2.7.7.9 GO:0003983 ... X2KZJ9 N/A
    50 6l7v:A (2.2) BS02 3PO 3.6.1.74 GO:0004651 ... Q4E2I1 32381506
    51 6ltv:A (1.87) BS01 3PO 2.5.1.6 GO:0004478 ... A0A0S4TKQ5 33017502
    52 6ltv:A (1.87) BS03 3PO 2.5.1.6 GO:0004478 ... A0A0S4TKQ5 33017502
    53 6ltv:B (1.87) BS01 3PO 2.5.1.6 GO:0004478 ... A0A0S4TKQ5 33017502
    54 6ltv:B (1.87) BS03 3PO 2.5.1.6 GO:0004478 ... A0A0S4TKQ5 33017502
    55 6qva:A (2.05) BS02 3PO ? N/A Q8KE09 31133615
    56 6wgv:A (2.151) BS02 3PO 2.5.1.17 GO:0005524 ... P9WP99 33199623
    57 6wh5:A (1.866) BS01 3PO 2.5.1.17 GO:0005524 ... P9WP99 33199623
    58 6wh5:A (1.866) BS03 3PO 2.5.1.17 GO:0005524 ... P9WP99 33199623
    59 6wh5:B (1.866) BS01 3PO 2.5.1.17 GO:0005524 ... P9WP99 33199623
    60 6wh5:B (1.866) BS03 3PO 2.5.1.17 GO:0005524 ... P9WP99 33199623
    61 6wh5:C (1.866) BS01 3PO 2.5.1.17 GO:0005524 ... P9WP99 33199623
    62 6wh5:C (1.866) BS02 3PO 2.5.1.17 GO:0005524 ... P9WP99 33199623
    63 7d2m:B (1.79) BS01 3PO 3.1.27.- GO:0003677 ... Q9RX98 33527318
    64 7ns9:A (1.75) BS03 3PO ? GO:0005524 ... Q4JAT2 34029589
    65 7nsf:A (2.0) BS01 3PO ? GO:0005524 ... Q4JAT2 34029589
    66 7p84:A (2.054) BS01 3PO 2.5.1.6 GO:0000287 ... Q58605 34606675
    67 7p84:A (2.054) BS02 3PO 2.5.1.6 GO:0000287 ... Q58605 34606675
    68 7p84:C (2.054) BS01 3PO 2.5.1.6 GO:0000287 ... Q58605 34606675
    69 7p84:C (2.054) BS02 3PO 2.5.1.6 GO:0000287 ... Q58605 34606675
    70 7p8m:A (1.71) BS01 3PO 2.5.1.6 GO:0000287 ... Q58605 34606675
    71 7p8m:A (1.71) BS02 3PO 2.5.1.6 GO:0000287 ... Q58605 34606675
    72 7p8m:C (1.71) BS01 3PO 2.5.1.6 GO:0000287 ... Q58605 34606675
    73 7p8m:C (1.71) BS02 3PO 2.5.1.6 GO:0000287 ... Q58605 34606675
    74 7plj:A (1.64) BS04 3PO ? GO:0005524 ... Q9RY20 N/A
    75 8c1n:A (1.7) BS02 3PO 2.7.7.48
    3.4.22.28
    3.4.22.46
    3.6.1.15    		 GO:0003723 ... P03311 37126532
    76 8c1n:B (1.7) BS02 3PO 2.7.7.48
    3.4.22.28
    3.4.22.46
    3.6.1.15    		 GO:0003723 ... P03311 37126532
    77 8d32:A (1.85) BS02 3PO 2.5.1.17 GO:0005524 ... P9WP99 N/A
    78 8dh2:B (2.9) BS04 3PO 2.7.7.6 GO:0000428 ... P00573 36635281
    79 8dh2:E (2.9) BS04 3PO 2.7.7.6 GO:0000428 ... P00573 36635281
    80 8dh2:I (2.9) BS03 3PO 2.7.7.6 GO:0000428 ... P00573 36635281
    81 8i6v:E (3.06) BS01 3PO 2.7.4.1 GO:0000329 ... P47075 37066886
    82 8jzg:A (2.39) BS02 3PO 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    83 8jzg:A (2.39) BS05 3PO 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    84 8jzg:B (2.39) BS01 3PO 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    85 8jzg:B (2.39) BS04 3PO 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    86 8jzg:C (2.39) BS03 3PO 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    87 8jzg:C (2.39) BS05 3PO 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    88 8jzg:D (2.39) BS03 3PO 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    89 8jzg:D (2.39) BS05 3PO 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    90 8qxl:A (2.82) BS05 3PO 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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