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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ejj:A (1.9) BS03 3PG 5.4.2.12 GO:0003824 ... Q9X519 10747010
    2 1qhf:A (1.7) BS01 3PG 5.4.2.11 GO:0003824 ... P00950 10531478
    3 1qhf:B (1.7) BS01 3PG 5.4.2.11 GO:0003824 ... P00950 10531478
    4 3uww:A (2.25) BS01 3PG 5.3.1.1 GO:0004807 ... Q6GIL6 22813930
    5 3uww:B (2.25) BS01 3PG 5.3.1.1 GO:0004807 ... Q6GIL6 22813930
    6 4njm:A (1.79) BS01 3PG 1.1.1.95 GO:0000166 ... Q76KF5 25294608
    7 4njm:B (1.79) BS01 3PG 1.1.1.95 GO:0000166 ... Q76KF5 25294608
    8 6m1x:C (2.48) BS01 3PG ? GO:0003824 ... C4M5P9 33631257
    9 6m1x:D (2.48) BS01 3PG ? GO:0003824 ... C4M5P9 33631257
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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