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BioLiP
Download all results in tab-seperated text for 7 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3p3c:A (1.25) BS02 3P3 3.5.1.108 GO:0006796 ... O67648 21167751 BindingDB: Kd=8nM, Ki=1nM
    2 3p3e:A (1.28) BS03 3P3 3.5.1.108 GO:0006796 ... P47205 21167751 BindingDB: Kd=8.35nM
    3 3p3g:A (1.65) BS02 3P3 N/A GO:0008759 ... N/A 21167751 MOAD: Ki=0.18nM
    PDBbind: -logKd/Ki=9.74, Ki=180pM
    4 4fw4:A (2.19) BS02 3P3 3.5.1.108 GO:0006796 ... P47205 N/A BindingDB: Kd=8.35nM
    5 4fw4:B (2.19) BS02 3P3 3.5.1.108 GO:0006796 ... P47205 N/A BindingDB: Kd=8.35nM
    6 4fw4:C (2.19) BS02 3P3 3.5.1.108 GO:0006796 ... P47205 N/A BindingDB: Kd=8.35nM
    7 4fw4:D (2.19) BS02 3P3 3.5.1.108 GO:0006796 ... P47205 N/A BindingDB: Kd=8.35nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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