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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1yq4:A (2.33) BS02 3NP 1.3.5.1 GO:0005739 ... Q9YHT1 16371358
    2 1zp0:A (3.5) BS02 3NP 1.3.5.1 GO:0005515 ... Q0QF01 15989954
    3 3p4s:A (3.1) BS02 3NP 1.3.5.1 GO:0000104 ... P00363 21098488
    4 4utx:A (3.1) BS03 3NP 2.3.1.- GO:0036054 ... Q6DHI5 25111069
    5 6c4a:A (1.8) BS03 3NP 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    6 6c4a:B (1.8) BS01 3NP 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    7 6c4a:C (1.8) BS03 3NP 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    8 6c4a:D (1.8) BS01 3NP 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    9 6c4c:E (2.2) BS03 3NP 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    10 6c4c:F (2.2) BS01 3NP 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    11 8cp2:A (2.1) BS05 3NP ? GO:0000166 ... A0A2V1NMV1 37302552
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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