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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3nm1:A (3.211) BS01 3NM 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    2 3nm1:B (3.211) BS01 3NM 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    3 3nm1:C (3.211) BS01 3NM 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    4 3nm1:D (3.211) BS01 3NM 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    5 3nm1:E (3.211) BS01 3NM 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    6 3nm1:F (3.211) BS01 3NM 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    7 3o15:A (1.95) BS01 3NM 2.5.1.3 GO:0000287 ... P39594 N/A
    8 3qh2:A (2.231) BS01 3NM 5.3.99.10 GO:0004789 ... P25053 21534620
    9 3qh2:B (2.231) BS01 3NM 5.3.99.10 GO:0004789 ... P25053 21534620
    10 3qh2:C (2.231) BS01 3NM 5.3.99.10 GO:0004789 ... P25053 21534620
    11 3qh2:D (2.231) BS01 3NM 5.3.99.10 GO:0004789 ... P25053 21534620
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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