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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3tct:A (1.3) BS01 3MI ? GO:0005179 ... P02766 22645360 MOAD: Kd=3nM
    PDBbind: -logKd/Ki=8.52, Kd=3nM
    BindingDB: IC50=3100nM, Kd=274nM
    2 3tct:B (1.3) BS01 3MI ? GO:0005179 ... P02766 22645360 MOAD: Kd=3nM
    PDBbind: -logKd/Ki=8.52, Kd=3nM
    BindingDB: IC50=3100nM, Kd=274nM
    3 4his:A (1.2) BS01 3MI ? GO:0005179 ... P02766 23716704 MOAD: Kd=8.1nM
    PDBbind: -logKd/Ki=8.09, Kd=8.1nM
    BindingDB: IC50=3100nM, Kd=274nM
    4 6e6z:A (1.75) BS01 3MI ? GO:0005179 ... P02766 N/A BindingDB: IC50=3100nM, Kd=274nM
    5 6e6z:B (1.75) BS01 3MI ? GO:0005179 ... P02766 N/A BindingDB: IC50=3100nM, Kd=274nM
    6 6e72:A (1.45) BS01 3MI ? GO:0005179 ... P02766 N/A BindingDB: IC50=3100nM, Kd=274nM
    7 6e72:B (1.45) BS01 3MI ? GO:0005179 ... P02766 N/A BindingDB: IC50=3100nM, Kd=274nM
    8 6e74:A (1.6) BS01 3MI ? GO:0005179 ... P02766 N/A BindingDB: IC50=3100nM, Kd=274nM
    9 6e74:B (1.6) BS01 3MI ? GO:0005179 ... P02766 N/A BindingDB: IC50=3100nM, Kd=274nM
    10 6e77:A (1.6) BS01 3MI ? GO:0005179 ... P02766 N/A BindingDB: IC50=3100nM, Kd=274nM
    11 6e77:B (1.6) BS01 3MI ? GO:0005179 ... P02766 N/A BindingDB: IC50=3100nM, Kd=274nM
    12 6fft:A (2.0) BS01 3MI ? GO:0005179 ... P02766 30804345 BindingDB: IC50=3100nM, Kd=274nM
    13 6fft:B (2.0) BS01 3MI ? GO:0005179 ... P02766 30804345 BindingDB: IC50=3100nM, Kd=274nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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