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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3aeo:A (2.15) BS01 3LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    2 3aeo:A (2.15) BS02 3LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    3 3aeo:B (2.15) BS01 3LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    4 3aeo:B (2.15) BS02 3LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    5 3aeo:C (2.15) BS01 3LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    6 3aeo:C (2.15) BS02 3LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    7 3aeo:D (2.15) BS01 3LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    8 3aeo:D (2.15) BS02 3LM 4.4.1.11 GO:0005737 ... Q86D28 N/A
    9 5x2w:A (2.7) BS01 3LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    10 5x2w:A (2.7) BS02 3LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    11 5x2w:B (2.7) BS01 3LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    12 5x2w:B (2.7) BS02 3LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    13 5x2w:C (2.7) BS01 3LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    14 5x2w:C (2.7) BS02 3LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    15 5x2w:D (2.7) BS01 3LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    16 5x2w:D (2.7) BS02 3LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    17 5x2z:A (1.8) BS01 3LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    18 5x2z:B (1.8) BS01 3LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    19 5x2z:C (1.8) BS01 3LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    20 5x2z:D (1.8) BS01 3LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 28329912
    21 7f1u:A (2.4) BS01 3LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 34953671
    22 7f1u:B (2.4) BS01 3LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 34953671
    23 7f1u:C (2.4) BS01 3LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 34953671
    24 7f1u:C (2.4) BS02 3LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 34953671
    25 7f1u:D (2.4) BS01 3LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 34953671
    26 7f1u:D (2.4) BS02 3LM 4.4.1.11
    4.4.1.2    		 GO:0005737 ... P13254 34953671
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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