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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1xes:A (1.7) BS01 3IO 2.3.1.146 GO:0005737 ... Q02323 N/A
    2 1xes:B (1.7) BS01 3IO 2.3.1.146 GO:0005737 ... Q02323 N/A
    3 1xes:C (1.7) BS01 3IO 2.3.1.146 GO:0005737 ... Q02323 N/A
    4 1xes:D (1.7) BS01 3IO 2.3.1.146 GO:0005737 ... Q02323 N/A
    5 1xet:B (2.0) BS01 3IO 2.3.1.146 GO:0005737 ... Q02323 N/A
    6 1xet:C (2.0) BS01 3IO 2.3.1.146 GO:0005737 ... Q02323 N/A
    7 1xet:D (2.0) BS01 3IO 2.3.1.146 GO:0005737 ... Q02323 N/A
    8 4pgn:A (1.8) BS01 3IO ? GO:0042597 ... Q315G1 25540822
    9 4pgn:B (1.8) BS01 3IO ? GO:0042597 ... Q315G1 25540822
    10 4pgn:C (1.8) BS01 3IO ? GO:0042597 ... Q315G1 25540822
    11 4pgn:D (1.8) BS01 3IO ? GO:0042597 ... Q315G1 25540822
    12 7eue:A (2.08757) BS02 3IO ? GO:0046872 ... L7PIL3 N/A
    13 7eue:B (2.08757) BS02 3IO ? GO:0046872 ... L7PIL3 N/A
    14 7qek:A (2.25) BS01 3IO ? N/A P0DV33 36602305
    15 7qek:B (2.25) BS01 3IO ? N/A P0DV33 36602305
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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