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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3pce:C (2.06) BS01 3HP 1.13.11.3 GO:0003824 ... P00436 9254599
    2 3pce:E (2.06) BS01 3HP 1.13.11.3 GO:0003824 ... P00436 9254599
    3 3pce:M (2.06) BS02 3HP 1.13.11.3 GO:0003824 ... P00437 9254599 MOAD: Ki=10mM
    PDBbind: -logKd/Ki=2.00, Ki=10mM
    4 3pce:N (2.06) BS02 3HP 1.13.11.3 GO:0003824 ... P00437 9254599 MOAD: Ki=10mM
    5 3pce:O (2.06) BS02 3HP 1.13.11.3 GO:0003824 ... P00437 9254599 MOAD: Ki=10mM
    6 3pce:P (2.06) BS02 3HP 1.13.11.3 GO:0003824 ... P00437 9254599 MOAD: Ki=10mM
    PDBbind: -logKd/Ki=2.00, Ki=10mM
    7 3pce:Q (2.06) BS02 3HP 1.13.11.3 GO:0003824 ... P00437 9254599 MOAD: Ki=10mM
    8 3pce:R (2.06) BS02 3HP 1.13.11.3 GO:0003824 ... P00437 9254599 MOAD: Ki=10mM
    9 5izz:A (1.6) BS01 3HP N/A GO:0055085 ... N/A N/A
    10 5rtg:A (1.01) BS01 3HP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33853786
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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