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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2dkh:A (1.8) BS02 3HB 1.14.13.23 GO:0016491 ... Q6SSJ6 17045293
    2 3pcb:F (2.19) BS01 3HB 1.13.11.3 GO:0003824 ... P00436 9254599
    3 3pcb:M (2.19) BS02 3HB 1.13.11.3 GO:0003824 ... P00437 9254599 MOAD: Ki=4mM
    PDBbind: -logKd/Ki=2.40, Ki=4mM
    4 3pcb:N (2.19) BS02 3HB 1.13.11.3 GO:0003824 ... P00437 9254599 MOAD: Ki=4mM
    5 3pcb:O (2.19) BS02 3HB 1.13.11.3 GO:0003824 ... P00437 9254599 MOAD: Ki=4mM
    6 3pcb:P (2.19) BS02 3HB 1.13.11.3 GO:0003824 ... P00437 9254599 MOAD: Ki=4mM
    7 3pcb:Q (2.19) BS02 3HB 1.13.11.3 GO:0003824 ... P00437 9254599 MOAD: Ki=4mM
    8 3pcb:R (2.19) BS02 3HB 1.13.11.3 GO:0003824 ... P00437 9254599 MOAD: Ki=4mM
    9 3tus:A (2.5) BS03 3HB 3.4.21.- GO:0005576 ... P24627 N/A
    10 4bk1:A (1.73) BS03 3HB 1.14.13.1 GO:0000166 ... Q0SFK6 23864660 BindingDB: Kd=4.8e+4nM
    11 4pai:A (1.4) BS01 3HB ? GO:0055085 ... Q5LSJ5 25540822
    12 4q6w:A (1.84) BS01 3HB ? GO:0006865 ... Q7VS30 N/A
    13 4q6w:B (1.84) BS01 3HB ? GO:0006865 ... Q7VS30 N/A
    14 5a3k:A (2.753) BS01 3HB 4.1.3.45 GO:0016829 ... O30478 26247872
    15 5a3k:B (2.753) BS01 3HB 4.1.3.45 GO:0016829 ... O30478 26247872
    16 5a3k:C (2.753) BS01 3HB 4.1.3.45 GO:0016829 ... O30478 26247872
    17 5hpi:A (2.963) BS01 3HB ? N/A Q43992 27536006
    18 5hpi:B (2.963) BS01 3HB ? N/A Q43992 27536006
    19 5hpi:C (2.963) BS01 3HB ? N/A Q43992 27536006
    20 5hpi:D (2.963) BS01 3HB ? N/A Q43992 27536006
    21 5i7i:A (1.3) BS01 3HB N/A GO:0055085 ... N/A N/A
    22 5i7i:B (1.3) BS01 3HB N/A GO:0055085 ... N/A N/A
    23 6o9a:A (2.326) BS01 3HB 4.2.1.151 GO:0009234 ... Q9RXE3 30855131
    24 6o9a:B (2.326) BS01 3HB 4.2.1.151 GO:0009234 ... Q9RXE3 30855131
    25 6sj3:A (1.17) BS01 3HB ? GO:0016787 ... A0A022MQ12 31903677
    26 6sj3:B (1.17) BS01 3HB ? GO:0016787 ... A0A022MQ12 31903677
    27 7trw:A (2.28) BS01 3HB ? N/A A0A380PDL3 N/A
    28 7x2y:A (2.48) BS01 3HB ? GO:0000166 ... A0A076PYH9 35667443
    29 7x2y:B (2.48) BS01 3HB ? GO:0000166 ... A0A076PYH9 35667443
    30 8zj0:D (2.9) BS01 3HB N/A N/A B7WRJ7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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