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BioLiP
Download all results in tab-seperated text for 38 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1goy:A (2.0) BS01 3GP 3.1.27.- GO:0003723 ... P00649 11976484
    2 1lov:A (1.55) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 12122018
    3 1low:A (1.9) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 12122018
    4 1loy:A (1.55) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 12122018
    5 1rga:A (1.7) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 8276784
    6 1rgc:A (2.0) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 8281918
    7 1rgc:B (2.0) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 8281918
    8 1rls:A (1.9) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 7912696
    9 1rms:A (1.9) BS01 3GP 4.6.1.24 GO:0003723 ... P00653 8218254
    10 1xz8:A (2.8) BS03 3GP 2.4.2.9 GO:0003723 ... P41007 15716449
    11 2gsp:A (1.8) BS02 3GP 4.6.1.24 GO:0001411 ... P00651 9546218
    12 2sar:A (1.8) BS01 3GP 4.6.1.24 GO:0003723 ... P05798 1654932
    13 3d4a:B (2.2) BS01 3GP 3.1.4.8 GO:0003723 ... Q53752 19558492
    14 3dh2:A (2.25) BS02 3GP 3.1.4.8 GO:0003723 ... Q53752 19558492
    15 3dh2:B (2.25) BS02 3GP 3.1.4.8 GO:0003723 ... Q53752 19558492
    16 3dh2:C (2.25) BS02 3GP 3.1.4.8 GO:0003723 ... Q53752 19558492
    17 3dh2:D (2.25) BS01 3GP 3.1.4.8 GO:0003723 ... Q53752 19558492
    18 3gsp:A (1.9) BS02 3GP 4.6.1.24 GO:0001411 ... P00651 9546218
    19 3wr2:A (1.75) BS01 3GP 4.6.1.24 GO:0003723 ... P81762 N/A
    20 3wr2:B (1.75) BS01 3GP 4.6.1.24 GO:0003723 ... P81762 N/A
    21 3wr2:C (1.75) BS01 3GP 4.6.1.24 GO:0003723 ... P81762 N/A
    22 3wr2:D (1.75) BS01 3GP 4.6.1.24 GO:0003723 ... P81762 N/A
    23 3wr2:E (1.75) BS01 3GP 4.6.1.24 GO:0003723 ... P81762 N/A
    24 3wr2:F (1.75) BS01 3GP 4.6.1.24 GO:0003723 ... P81762 N/A
    25 4gsp:A (1.65) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 9546218
    26 4hi6:A (2.2) BS01 3GP ? GO:0016020 ... P0C794 N/A
    27 4hi6:A (2.2) BS02 3GP ? GO:0016020 ... P0C794 N/A
    28 4hi6:B (2.2) BS01 3GP ? GO:0016020 ... P0C794 N/A
    29 4hi6:D (2.2) BS01 3GP ? GO:0016020 ... P0C794 N/A
    30 4w8x:A (3.0) BS01 3GP ? GO:0003723 ... Q8U1S5 25280103
    31 5gsp:A (1.8) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 9546218
    32 6gsp:A (2.2) BS01 3GP 4.6.1.24 GO:0001411 ... P00651 9546218
    33 8iy2:A (2.76) BS02 3GP ? N/A Q6PVL0 38103556
    34 8iy2:B (2.76) BS02 3GP ? N/A Q6PVL0 38103556
    35 8iy2:C (2.76) BS02 3GP ? N/A Q6PVL0 38103556
    36 8iy2:D (2.76) BS01 3GP ? N/A Q6PVL0 38103556
    37 8iy2:E (2.76) BS02 3GP ? N/A Q6PVL0 38103556
    38 8iy2:F (2.76) BS01 3GP ? N/A Q6PVL0 38103556
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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