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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1m0w:A (1.8) BS03 3GC 6.3.2.3 GO:0000287 ... Q08220 12467574
    2 1m0w:B (1.8) BS03 3GC 6.3.2.3 GO:0000287 ... Q08220 12467574
    3 2bu3:A (1.4) BS01 3GC 2.3.2.15 GO:0010038 ... Q8YY76 16339904
    4 2bu3:B (1.4) BS01 3GC 2.3.2.15 GO:0010038 ... Q8YY76 16339904
    5 3kak:A (2.11) BS01 3GC 6.3.2.3 GO:0000287 ... Q9M426 19948790
    6 3kak:B (2.11) BS01 3GC 6.3.2.3 GO:0000287 ... Q9M426 19948790
    7 3kak:B (2.11) BS02 3GC 6.3.2.3 GO:0000287 ... Q9M426 19948790
    8 4x8d:A (1.98) BS01 3GC 1.14.99.50 GO:0004497 ... G7CFI3 25597398
    9 4x8d:B (1.98) BS01 3GC 1.14.99.50 GO:0004497 ... G7CFI3 25597398
    10 5oes:A (2.48) BS02 3GC 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    11 5oes:B (2.48) BS02 3GC 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    12 5oes:C (2.48) BS02 3GC 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    13 5oes:D (2.48) BS02 3GC 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    14 5oes:E (2.48) BS02 3GC 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    15 5oes:F (2.48) BS02 3GC 6.3.2.3 GO:0000287 ... M1CSC4 29641602
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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