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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3q7a:B (2.0) BS05 3FX N/A GO:0003824 ... N/A 21816822
    2 3q7a:B (2.0) BS06 3FX N/A GO:0003824 ... N/A 21816822
    3 3q7a:B (2.0) BS07 3FX N/A GO:0003824 ... N/A 21816822
    4 3sfx:B (2.0) BS02 3FX N/A GO:0003824 ... N/A 21816822
    5 3sfx:B (2.0) BS03 3FX N/A GO:0003824 ... N/A 21816822
    6 3sfx:B (2.0) BS04 3FX N/A GO:0003824 ... N/A 21816822
    7 3sfy:B (2.1) BS02 3FX N/A GO:0003824 ... N/A 21816822
    8 3sfy:B (2.1) BS03 3FX N/A GO:0003824 ... N/A 21816822
    9 3sfy:B (2.1) BS04 3FX N/A GO:0003824 ... N/A 21816822
    10 5ilh:A (2.1) BS03 3FX 4.2.3.61 GO:0000287 ... Q40577 N/A
    11 5ili:A (1.9) BS02 3FX 4.2.3.61 GO:0000287 ... Q40577 N/A
    12 6jp7:H (1.909) BS01 3FX N/A N/A N/A 31907057
    13 6jp7:L (1.909) BS01 3FX N/A N/A N/A 31907057
    14 6jp7:L (1.909) BS02 3FX N/A N/A N/A 31907057
    15 6yat:A (2.58) BS01 3FX 2.7.11.1 GO:0004672 ... Q13043 34807584
    16 7t08:B (1.803) BS02 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    17 7t08:B (1.803) BS03 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    18 7t08:B (1.803) BS04 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    19 7t09:B (1.984) BS02 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    20 7t09:B (1.984) BS03 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    21 7t09:B (1.984) BS04 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    22 7t0a:B (2.099) BS02 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    23 7t0a:B (2.099) BS03 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    24 7t0a:B (2.099) BS04 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    25 7t0b:B (2.026) BS02 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    26 7t0b:B (2.026) BS03 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    27 7t0b:B (2.026) BS04 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    28 7t0c:B (1.903) BS03 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    29 7t0c:B (1.903) BS04 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    30 7t0c:B (1.903) BS05 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    31 7t0d:B (1.906) BS01 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    32 7t0d:B (1.906) BS04 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    33 7t0d:B (1.906) BS05 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    34 7t0e:B (2.223) BS02 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    35 7t0e:B (2.223) BS03 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    36 7t0e:B (2.223) BS04 3FX 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    37 8t70:B (1.892) BS03 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    38 8t70:B (1.892) BS04 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    39 8t70:B (1.892) BS05 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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