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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3fu7:A (1.67) BS06 3DM 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    2 3fu8:A (1.8) BS05 3DM 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    3 3fu8:B (1.8) BS05 3DM 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    4 3vxj:A (1.39) BS02 3DM 1.11.1.19 GO:0004601 ... Q8WZK8 N/A
    5 3vxj:A (1.39) BS03 3DM 1.11.1.19 GO:0004601 ... Q8WZK8 N/A
    6 5omu:A (1.95) BS02 3DM ? GO:0004497 ... A0A076MY51 29950589
    7 5oy2:A (1.36) BS03 3DM 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    8 6hqq:A (1.66) BS02 3DM 1.14.14.- GO:0004497 ... P0DPQ7 31235604 MOAD: Kd=1.7uM
    9 6hqr:A (1.79) BS02 3DM 1.14.14.- GO:0004497 ... P0DPQ7 31235604
    10 6hqs:A (2.17) BS02 3DM 1.14.14.- GO:0004497 ... P0DPQ7 31235604
    11 6hqt:A (1.85) BS02 3DM 1.14.14.- GO:0004497 ... P0DPQ7 31235604
    12 8u19:A (1.26) BS02 3DM N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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