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BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3oqj:A (2.399) BS01 3CX 2.3.2.22 GO:0016740 ... Q65EX3 21325056
    2 3oqj:B (2.399) BS01 3CX 2.3.2.22 GO:0016740 ... Q65EX3 21325056
    3 3q73:B (2.3) BS05 3CX N/A GO:0003824 ... N/A 21816822
    4 3q73:B (2.3) BS06 3CX N/A GO:0003824 ... N/A 21816822
    5 3q73:B (2.3) BS07 3CX N/A GO:0003824 ... N/A 21816822
    6 3q75:B (2.14) BS04 3CX N/A GO:0003824 ... N/A 21816822
    7 3q75:B (2.14) BS05 3CX N/A GO:0003824 ... N/A 21816822
    8 3q78:B (2.2) BS03 3CX N/A GO:0003824 ... N/A 21816822
    9 3q78:B (2.2) BS04 3CX N/A GO:0003824 ... N/A 21816822
    10 3q79:B (2.506) BS04 3CX N/A GO:0003824 ... N/A 21816822
    11 3q79:B (2.506) BS05 3CX N/A GO:0003824 ... N/A 21816822
    12 3q79:B (2.506) BS06 3CX N/A GO:0003824 ... N/A 21816822
    13 3q7f:B (2.2) BS04 3CX N/A GO:0003824 ... N/A 21816822
    14 3q7f:B (2.2) BS05 3CX N/A GO:0003824 ... N/A 21816822
    15 3q7f:B (2.2) BS06 3CX N/A GO:0003824 ... N/A 21816822
    16 4z7x:A (1.55) BS01 3CX ? N/A A0A0M3KL32 26170452
    17 4z7x:B (1.55) BS01 3CX ? N/A A0A0M3KL32 26170452
    18 5ilh:A (2.1) BS04 3CX 4.2.3.61 GO:0000287 ... Q40577 N/A
    19 5ili:A (1.9) BS03 3CX 4.2.3.61 GO:0000287 ... Q40577 N/A
    20 5m82:A (1.86) BS01 3CX 2.7.13.3 GO:0005975 ... P73184 N/A
    21 5m85:A (2.1) BS01 3CX 2.7.13.3 GO:0005975 ... P73184 N/A
    22 7a3q:H (2.7) BS01 3CX N/A N/A N/A 34852239
    23 7a3q:I (2.7) BS01 3CX N/A N/A N/A 34852239
    24 7qxc:HHH (1.452) BS01 3CX N/A N/A N/A 36313161
    25 8bpd:A (1.8) BS01 3CX 3.2.1.212 GO:0046872 ... A0A0N8WFH1 37877949
    26 8bpd:A (1.8) BS02 3CX 3.2.1.212 GO:0046872 ... A0A0N8WFH1 37877949
    27 8bpd:A (1.8) BS03 3CX 3.2.1.212 GO:0046872 ... A0A0N8WFH1 37877949
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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