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BioLiP
Download all results in tab-seperated text for 45 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3by4:A (1.55) BS01 3CN 3.4.19.12 N/A P43558 18270205
    2 3c0r:A (2.315) BS01 3CN 3.4.19.12 N/A P43558 18270205
    3 3c0r:C (2.315) BS01 3CN 3.4.19.12 N/A P43558 18270205
    4 4hxd:B (2.85) BS01 3CN 2.7.7.48
    3.1.-.-
    3.4.19.12
    3.4.22.-    		 N/A Q66431 23345508
    5 4hxd:D (2.85) BS01 3CN 2.7.7.48
    3.1.-.-
    3.4.19.12
    3.4.22.-    		 N/A Q66431 23345508
    6 4rf0:A (2.8) BS02 3CN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0006508 ... M4STU1 25320088
    7 4rf1:A (2.15) BS02 3CN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0006508 ... M4STU1 25320088
    8 5sxu:A (3.1) BS03 3CN ? GO:0004888 ... E0SJQ4 27916519
    9 5sxu:B (3.1) BS02 3CN ? GO:0004888 ... E0SJQ4 27916519
    10 5sxu:C (3.1) BS02 3CN ? GO:0004888 ... E0SJQ4 27916519
    11 5sxu:E (3.1) BS01 3CN ? GO:0004888 ... E0SJQ4 27916519
    12 5sxu:F (3.1) BS03 3CN ? GO:0004888 ... E0SJQ4 27916519
    13 5sxu:G (3.1) BS02 3CN ? GO:0004888 ... E0SJQ4 27916519
    14 5sxu:H (3.1) BS02 3CN ? GO:0004888 ... E0SJQ4 27916519
    15 6v03:A (3.3) BS01 3CN ? GO:0004888 ... E0SJQ4 31911476
    16 7mic:A (2.09) BS01 3CN 2.1.1.-
    2.7.7.48
    3.6.4.13    		 GO:0004197 ... Q91TW9 34265303
    17 8eho:A (2.85) BS02 3CN 3.4.19.12 GO:0016032 ... W0NX70 38096325
    18 8eho:C (2.85) BS02 3CN 3.4.19.12 GO:0016032 ... W0NX70 38096325
    19 8eho:E (2.85) BS02 3CN 3.4.19.12 GO:0016032 ... W0NX70 38096325
    20 8f32:A (3.71) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    21 8f32:B (3.71) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    22 8f32:C (3.71) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    23 8f32:D (3.71) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    24 8f32:E (3.71) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    25 8f33:A (3.28) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    26 8f33:B (3.28) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    27 8f33:C (3.28) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    28 8f33:D (3.28) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    29 8f33:E (3.28) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    30 8f34:A (3.12) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    31 8f34:B (3.12) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    32 8f34:C (3.12) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    33 8f34:D (3.12) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    34 8f34:E (3.12) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    35 8ikt:B (2.6) BS01 3CN N/A N/A P62987 39221915
    36 8twv:A (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    37 8twv:B (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    38 8twv:C (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    39 8twv:D (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    40 8twv:E (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    41 8twz:A (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    42 8twz:B (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    43 8twz:C (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    44 8twz:D (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    45 8twz:E (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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