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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2h6b:A (2.2) BS01 3C4 ? GO:0003677 ... Q8RPJ2 16803881 MOAD: Kd=4.1uM
    PDBbind: -logKd/Ki=5.39, Kd=4.1uM
    2 2h6b:B (2.2) BS01 3C4 ? GO:0003677 ... Q8RPJ2 16803881 MOAD: Kd=4.1uM
    PDBbind: -logKd/Ki=5.39, Kd=4.1uM
    3 2h6b:B (2.2) BS02 3C4 ? GO:0003677 ... Q8RPJ2 16803881 MOAD: Kd=4.1uM
    PDBbind: -logKd/Ki=5.39, Kd=4.1uM
    4 3e5u:A (1.83) BS01 3C4 ? GO:0003677 ... B8FW11 18717788
    5 3e5u:A (1.83) BS02 3C4 ? GO:0003677 ... B8FW11 18717788
    6 3e5u:A (1.83) BS03 3C4 ? GO:0003677 ... B8FW11 18717788
    7 3e5u:B (1.83) BS01 3C4 ? GO:0003677 ... B8FW11 18717788
    8 3e5u:B (1.83) BS02 3C4 ? GO:0003677 ... B8FW11 18717788
    9 3e5u:C (1.83) BS01 3C4 ? GO:0003677 ... B8FW11 18717788 PDBbind: -logKd/Ki=5.85, Kd=1.4uM
    10 3e5u:C (1.83) BS02 3C4 ? GO:0003677 ... B8FW11 18717788 PDBbind: -logKd/Ki=5.85, Kd=1.4uM
    11 3e5u:D (1.83) BS01 3C4 ? GO:0003677 ... B8FW11 18717788 PDBbind: -logKd/Ki=5.85, Kd=1.4uM
    12 3e5u:D (1.83) BS02 3C4 ? GO:0003677 ... B8FW11 18717788 PDBbind: -logKd/Ki=5.85, Kd=1.4uM
    13 3e5x:A (1.999) BS01 3C4 ? GO:0003677 ... B8FW11 18717788
    14 3e5x:A (1.999) BS02 3C4 ? GO:0003677 ... B8FW11 18717788
    15 3e5x:B (1.999) BS01 3C4 ? GO:0003677 ... B8FW11 18717788
    16 3e5x:B (1.999) BS02 3C4 ? GO:0003677 ... B8FW11 18717788
    17 3e5x:B (1.999) BS03 3C4 ? GO:0003677 ... B8FW11 18717788
    18 3e5x:C (1.999) BS01 3C4 ? GO:0003677 ... B8FW11 18717788
    19 3e5x:D (1.999) BS01 3C4 ? GO:0003677 ... B8FW11 18717788
    20 3e5x:D (1.999) BS02 3C4 ? GO:0003677 ... B8FW11 18717788
    21 3e6b:A (2.01) BS01 3C4 ? GO:0003677 ... B8FW11 18717788
    22 3e6b:A (2.01) BS02 3C4 ? GO:0003677 ... B8FW11 18717788
    23 3e6b:B (2.01) BS01 3C4 ? GO:0003677 ... B8FW11 18717788
    24 3e6b:B (2.01) BS02 3C4 ? GO:0003677 ... B8FW11 18717788
    25 3e6c:C (1.8) BS03 3C4 ? GO:0003677 ... B8FW11 18717788
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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