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BioLiP
Download all results in tab-seperated text for 282 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5d0z:V (2.9) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    202 5d0z:V (2.9) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    203 5d0z:Y (2.9) BS02 3BV 3.4.25.1 GO:0004298 ... P30656 26964885
    204 5d0z:Z (2.9) BS01 3BV 3.4.25.1 GO:0000502 ... P23724 26964885
    205 5d0z:b (2.9) BS01 3BV 3.4.25.1 GO:0000502 ... P38624 26964885
    206 5fgd:H (2.8) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    207 5fgd:H (2.8) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    208 5fgd:N (2.8) BS01 3BV 3.4.25.1 GO:0000502 ... P38624 26964885
    209 5fgd:V (2.8) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    210 5fgd:V (2.8) BS03 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    211 5fgd:W (2.8) BS01 3BV 3.4.25.1 GO:0000502 ... P25451 26964885
    212 5fgd:b (2.8) BS01 3BV 3.4.25.1 GO:0000502 ... P38624 26964885
    213 5fge:H (2.6) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    214 5fge:H (2.6) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    215 5fge:N (2.6) BS01 3BV 3.4.25.1 GO:0000502 ... P38624 26964885
    216 5fge:V (2.6) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    217 5fge:V (2.6) BS03 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    218 5fge:b (2.6) BS01 3BV 3.4.25.1 GO:0000502 ... P38624 26964885
    219 5fgf:H (2.6) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    220 5fgf:H (2.6) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    221 5fgf:I (2.6) BS01 3BV 3.4.25.1 GO:0000502 ... P25451 26964885
    222 5fgf:N (2.6) BS01 3BV 3.4.25.1 GO:0000502 ... P38624 26964885
    223 5fgf:V (2.6) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    224 5fgf:V (2.6) BS03 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    225 5fgf:W (2.6) BS01 3BV 3.4.25.1 GO:0000502 ... P25451 26964885
    226 5fgf:b (2.6) BS01 3BV 3.4.25.1 GO:0000502 ... P38624 26964885
    227 5fgg:H (2.7) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    228 5fgg:H (2.7) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    229 5fgg:K (2.7) BS01 3BV 3.4.25.1 GO:0004298 ... P30656 26964885
    230 5fgg:L (2.7) BS01 3BV 3.4.25.1 GO:0000502 ... P23724 26964885
    231 5fgg:N (2.7) BS01 3BV 3.4.25.1 GO:0000502 ... P38624 26964885
    232 5fgg:V (2.7) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    233 5fgg:V (2.7) BS03 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    234 5fgg:W (2.7) BS01 3BV 3.4.25.1 GO:0000502 ... P25451 26964885
    235 5fgg:Y (2.7) BS02 3BV 3.4.25.1 GO:0004298 ... P30656 26964885
    236 5fgg:Z (2.7) BS01 3BV 3.4.25.1 GO:0000502 ... P23724 26964885
    237 5fgg:b (2.7) BS01 3BV 3.4.25.1 GO:0000502 ... P38624 26964885
    238 5fgi:K (2.9) BS01 3BV 3.4.25.1 GO:0004298 ... P30656 26964885
    239 5fgi:L (2.9) BS01 3BV 3.4.25.1 GO:0000502 ... P23724 26964885
    240 5fgi:Y (2.9) BS02 3BV 3.4.25.1 GO:0004298 ... P30656 26964885
    241 5fgi:Z (2.9) BS01 3BV 3.4.25.1 GO:0000502 ... P23724 26964885
    242 5fhs:H (2.7) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    243 5fhs:H (2.7) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    244 5fhs:I (2.7) BS01 3BV 3.4.25.1 GO:0000502 ... P25451 26964885
    245 5fhs:K (2.7) BS01 3BV 3.4.25.1 GO:0004298 ... P30656 26964885
    246 5fhs:L (2.7) BS01 3BV 3.4.25.1 GO:0000502 ... P23724 26964885
    247 5fhs:N (2.7) BS01 3BV 3.4.25.1 GO:0000502 ... P38624 26964885
    248 5fhs:V (2.7) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    249 5fhs:V (2.7) BS03 3BV 3.4.25.1 GO:0004298 ... P25043 26964885
    250 5fhs:W (2.7) BS01 3BV 3.4.25.1 GO:0000502 ... P25451 26964885
    251 5fhs:b (2.7) BS01 3BV 3.4.25.1 GO:0000502 ... P38624 26964885
    252 5l5e:H (2.9) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 27789522
    253 5l5e:H (2.9) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 27789522
    254 5l5e:I (2.9) BS01 3BV 3.4.25.1 GO:0000502 ... P25451 27789522
    255 5l5e:K (2.9) BS01 3BV 3.4.25.1 GO:0004298 ... P28062
    P30656    		 27789522
    256 5l5e:N (2.9) BS01 3BV 3.4.25.1 GO:0000502 ... P38624 27789522
    257 5l5e:V (2.9) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 27789522
    258 5l5e:V (2.9) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 27789522
    259 5l5e:W (2.9) BS01 3BV 3.4.25.1 GO:0000502 ... P25451 27789522
    260 5l5e:Y (2.9) BS02 3BV 3.4.25.1 GO:0004298 ... P28062
    P30656    		 27789522
    261 5l5e:b (2.9) BS01 3BV 3.4.25.1 GO:0000502 ... P38624 27789522
    262 5l5y:H (2.7) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 27789522
    263 5l5y:H (2.7) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 27789522
    264 5l5y:I (2.7) BS01 3BV 3.4.25.1 GO:0000502 ... P25451 27789522
    265 5l5y:K (2.7) BS01 3BV 3.4.25.1 GO:0004298 ... P28074
    P30656    		 27789522
    266 5l5y:L (2.7) BS01 3BV 3.4.25.1 GO:0005839 ... P20618
    P23724    		 27789522
    267 5l5y:N (2.7) BS01 3BV 3.4.25.1 GO:0000502 ... P38624 27789522
    268 5l5y:V (2.7) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 27789522
    269 5l5y:V (2.7) BS03 3BV 3.4.25.1 GO:0004298 ... P25043 27789522
    270 5l5y:W (2.7) BS01 3BV 3.4.25.1 GO:0000502 ... P25451 27789522
    271 5l5y:Y (2.7) BS02 3BV 3.4.25.1 GO:0004298 ... P28074
    P30656    		 27789522
    272 5l5y:Z (2.7) BS01 3BV 3.4.25.1 GO:0005839 ... P20618
    P23724    		 27789522
    273 5l5y:b (2.7) BS01 3BV 3.4.25.1 GO:0000502 ... P38624 27789522
    274 5l65:H (2.9) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 27789522
    275 5l65:H (2.9) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 27789522
    276 5l65:I (2.9) BS01 3BV 3.4.25.1 GO:0000502 ... P25451 27789522
    277 5l65:K (2.9) BS01 3BV 3.4.25.1 GO:0004298 ... P28063
    P30656    		 27789522
    278 5l65:N (2.9) BS01 3BV 3.4.25.1 GO:0000502 ... P38624 27789522
    279 5l65:V (2.9) BS01 3BV 3.4.25.1 GO:0004298 ... P25043 27789522
    280 5l65:V (2.9) BS02 3BV 3.4.25.1 GO:0004298 ... P25043 27789522
    281 5l65:Y (2.9) BS02 3BV 3.4.25.1 GO:0004298 ... P28063
    P30656    		 27789522
    282 5l65:b (2.9) BS01 3BV 3.4.25.1 GO:0000502 ... P38624 27789522
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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