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BioLiP
Download all results in tab-seperated text for 7 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4qta:A (1.45) BS01 38Z 2.7.11.24 GO:0000165 ... P28482 25195011 MOAD: Kd=0.233uM
    PDBbind: -logKd/Ki=6.70, Kd~200nM
    2 4qtb:A (1.4) BS01 38Z 2.7.11.24 GO:0000165 ... P27361 25195011 MOAD: Kd=0.213uM
    PDBbind: -logKd/Ki=6.70, Kd~200nM
    3 4qtb:B (1.4) BS01 38Z 2.7.11.24 GO:0000165 ... P27361 25195011 MOAD: Kd=0.213uM
    4 4qtc:A (1.4) BS01 38Z 2.7.11.1 GO:0004672 ... Q8TF76 25195011 MOAD: Kd=0.297uM
    PDBbind: -logKd/Ki=6.40, IC50=398nM
    5 4qtd:A (1.5) BS01 38Z 2.7.11.24 GO:0004672 ... P45983 25195011 MOAD: ic50=1080nM
    PDBbind: -logKd/Ki=5.97, IC50=1080nM
    6 5hd4:A (1.45) BS01 38Z 2.7.11.24 GO:0000165 ... P63086 26832798
    7 5hd7:A (1.69) BS01 38Z 2.7.11.24 GO:0000165 ... P63086 26832798
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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