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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4tuz:A (1.9) BS02 36J ? N/A P03372 25500867
    2 4tuz:B (1.9) BS02 36J ? N/A P03372 25500867
    3 5ie4:A (2.8) BS01 36J ? GO:0009636 ... Q8NKB0 N/A
    4 5ie4:B (2.8) BS01 36J ? GO:0009636 ... Q8NKB0 N/A
    5 5ie5:A (2.39) BS01 36J ? GO:0009636 ... Q8NKB0 N/A
    6 5ie5:B (2.39) BS01 36J ? GO:0009636 ... Q8NKB0 N/A
    7 5xo7:A (1.88) BS01 36J ? N/A A0A0D2ILK1 N/A PDBbind: -logKd/Ki=6.36, Kd=0.44uM
    8 5xo7:B (1.88) BS01 36J ? N/A A0A0D2ILK1 N/A
    9 5xo7:C (1.88) BS01 36J ? N/A A0A0D2ILK1 N/A
    10 5xo7:D (1.88) BS01 36J ? N/A A0A0D2ILK1 N/A
    11 5xo7:E (1.88) BS01 36J ? N/A A0A0D2ILK1 N/A
    12 5xo7:F (1.88) BS01 36J ? N/A A0A0D2ILK1 N/A
    13 5xo7:G (1.88) BS01 36J ? N/A A0A0D2ILK1 N/A
    14 5xo7:H (1.88) BS01 36J ? N/A A0A0D2ILK1 N/A
    15 5z7j:A (1.98) BS01 36J ? N/A A0A0D2ILK1 N/A PDBbind: -logKd/Ki=6.60, Kd=0.25uM
    16 5z7j:B (1.98) BS01 36J ? N/A A0A0D2ILK1 N/A
    17 5z7j:C (1.98) BS01 36J ? N/A A0A0D2ILK1 N/A
    18 5z7j:D (1.98) BS01 36J ? N/A A0A0D2ILK1 N/A
    19 5z7j:E (1.98) BS01 36J ? N/A A0A0D2ILK1 N/A
    20 5z7j:F (1.98) BS01 36J ? N/A A0A0D2ILK1 N/A
    21 5z7j:G (1.98) BS01 36J ? N/A A0A0D2ILK1 N/A
    22 5z7j:H (1.98) BS01 36J ? N/A A0A0D2ILK1 N/A
    23 6jr2:A (1.65) BS01 36J ? N/A A0A0N9XBU7 N/A
    24 6jr2:B (1.65) BS01 36J ? N/A A0A0N9XBU7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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