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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4qmm:A (1.852) BS01 35R 2.7.11.1 GO:0004672 ... Q9Y6E0 27135311 MOAD: ic50=0.46uM
    PDBbind: -logKd/Ki=6.34, IC50=0.46uM
    2 5n23:A (2.088) BS02 35R 2.7.11.11 GO:0004672 ... P17612 N/A
    3 5ut0:A (2.102) BS01 35R 2.7.10.2 GO:0004672 ... O60674 28626521 PDBbind: -logKd/Ki=5.88, Kd=1323nM
    BindingDB: Kd=11nM
    4 5wim:A (2.55) BS01 35R 2.7.10.2 GO:0004672 ... O60674 30763067 BindingDB: Kd=11nM
    5 6cpg:A (2.8) BS01 35R 2.7.11.1 GO:0000212 ... O14965 29901437
    6 6cpg:D (2.8) BS01 35R 2.7.11.1 GO:0000212 ... O14965 29901437
    7 6d2i:A (3.192) BS01 35R 2.7.10.2 GO:0004672 ... O60674 30763067 BindingDB: Kd=11nM
    8 6d2i:B (3.192) BS01 35R 2.7.10.2 GO:0004672 ... O60674 30763067 BindingDB: Kd=11nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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