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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4oio:D (3.1) BS06 2TM 2.7.7.6 GO:0000287 ... Q8RQE8 24755292
    2 4q4z:D (2.9) BS05 2TM 2.7.7.6 GO:0000287 ... Q8RQE8 24973216
    3 5x22:D (3.35) BS06 2TM 2.7.7.6 GO:0000287 ... Q8RQE8 28622509
    4 5x22:M (3.35) BS04 2TM 2.7.7.6 GO:0000428 ... Q8RQE9 28622509
    5 5x22:N (3.35) BS08 2TM 2.7.7.6 GO:0000287 ... Q8RQE8 28622509
    6 6juq:A (2.74) BS04 2TM 2.7.7.7 GO:0000287 ... Q47155 31544946
    7 6juq:F (2.74) BS03 2TM 2.7.7.7 GO:0000287 ... Q47155 31544946
    8 6jur:A (2.06) BS04 2TM 2.7.7.7 GO:0000287 ... A0QR77 31544946
    9 6jur:F (2.06) BS04 2TM 2.7.7.7 GO:0000287 ... A0QR77 31544946
    10 6jus:A (2.5) BS04 2TM 2.7.7.7 GO:0000287 ... A0QR77 31544946
    11 6jus:F (2.5) BS04 2TM 2.7.7.7 GO:0000287 ... A0QR77 31544946
    12 6p1t:A (1.7) BS04 2TM 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    13 6p1w:A (1.751) BS04 2TM 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    14 6q52:A (2.3) BS01 2TM 2.7.7.72 GO:0000049 ... A0A1C7DQ98 31098026
    15 6ywn:A (1.45) BS02 2TM ? N/A G2R014 32785623
    16 7eh0:D (2.808) BS08 2TM 2.7.7.6 GO:0000287 ... Q8RQE8 34187896
    17 7eh1:D (2.9) BS06 2TM 2.7.7.6 GO:0000287 ... Q8RQE8 34187896
    18 7mkn:D (3.3) BS07 2TM 2.7.7.6 GO:0000287 ... P0A8T7 34774797
    19 7mko:D (3.15) BS07 2TM 2.7.7.6 GO:0000287 ... P0A8T7 34774797
    20 7oqx:A (2.2) BS01 2TM ? GO:0000049 ... A0A1C7DQ98 34765099
    21 7qtl:B (2.48) BS04 2TM 2.7.7.48 GO:0000166 ... M9TLW3 36596301
    22 7vba:A (2.89) BS06 2TM 2.7.7.6 GO:0000287 ... O95602 34671025
    23 8eos:D (3.1) BS04 2TM 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    24 8w8p:D (3.165) BS08 2TM N/A GO:0000287 ... Q8RQE8 38990947
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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