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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ogj:A (1.65) BS01 2TA ? N/A O60885 24584101 MOAD: Kd=164nM
    PDBbind: -logKd/Ki=6.79, Kd=164nM
    BindingDB: Kd=164nM, IC50=290nM
    2 4ogj:A (1.65) BS02 2TA ? N/A O60885 24584101 MOAD: Kd=164nM
    PDBbind: -logKd/Ki=6.79, Kd=164nM
    BindingDB: Kd=164nM, IC50=290nM
    3 4ogj:B (1.65) BS01 2TA ? N/A O60885 24584101 MOAD: Kd=164nM
    BindingDB: Kd=164nM, IC50=290nM
    4 4ogj:B (1.65) BS02 2TA ? N/A O60885 24584101 MOAD: Kd=164nM
    BindingDB: Kd=164nM, IC50=290nM
    5 4ps5:A (1.4) BS01 2TA ? N/A O60885 24568369 MOAD: ic50=0.29uM
    PDBbind: -logKd/Ki=6.54, IC50=0.29uM
    BindingDB: Kd=164nM, IC50=290nM
    6 4ps5:B (1.4) BS01 2TA ? N/A O60885 24568369 MOAD: ic50=0.29uM
    BindingDB: Kd=164nM, IC50=290nM
    7 6vne:A (2.32) BS01 2TA 2.7.10.2 GO:0004672 ... O60674 33570945 BindingDB: IC50=3.0nM, Kd=1.1nM
    8 6vne:B (2.32) BS01 2TA 2.7.10.2 GO:0004672 ... O60674 33570945 BindingDB: IC50=3.0nM, Kd=1.1nM
    9 8xv9:A (3.8) BS01 2TA ? GO:0005506 ... P0ABE7
    Q9BZV2    		 38503960
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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