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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4a4e:A (-1.00) BS01 2MR ? GO:0003723 ... Q16637 22101937 PDBbind: -logKd/Ki=3.32, Kd=0.476mM
    2 4a4f:A (-1.00) BS01 2MR ? GO:0003723 ... O75940 22101937 PDBbind: -logKd/Ki=2.88, Kd=1.317mM
    3 5lug:B (1.7) BS02 2MR ? GO:0007276 ... Q9BPZ2 N/A
    4 5m9n:B (1.95) BS01 2MR ? N/A Q9BXT4 N/A
    5 5vqh:A (2.4) BS01 2MR ? N/A H9JD76 N/A
    6 5vqh:B (2.4) BS01 2MR ? N/A H9JD76 N/A
    7 6ax3:A (2.25) BS01 2MR 1.14.11.73
    3.4.-.-    		 N/A Q8N371 29459673
    8 6oi2:A (1.68) BS01 2MR ? GO:0000122 ... P61964 32207970
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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