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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4nj9:H (1.95) BS01 2M9 ? N/A Q9D8L4 25756188 PDBbind: -logKd/Ki=6.97, Kd=108nM
    2 4nj9:L (1.95) BS04 2M9 ? N/A Q52L95 25756188 PDBbind: -logKd/Ki=6.97, Kd=108nM
    3 4nja:H (2.204) BS01 2M9 ? N/A A0A0F7R1P3 25756188 PDBbind: -logKd/Ki=6.22, Kd=600nM
    4 4nja:L (2.204) BS02 2M9 ? GO:0002250 ... P01660
    Q52L95    		 25756188 PDBbind: -logKd/Ki=6.22, Kd=600nM
    5 6m87:A (2.609) BS01 2M9 N/A N/A N/A 31243995
    6 6m87:B (2.609) BS01 2M9 N/A N/A N/A 31243995
    7 6m87:B (2.609) BS02 2M9 N/A N/A N/A 31243995
    8 6m87:C (2.609) BS01 2M9 N/A N/A N/A 31243995
    9 6m87:D (2.609) BS01 2M9 N/A N/A N/A 31243995
    10 6m87:E (2.609) BS01 2M9 N/A N/A N/A 31243995
    11 6m87:F (2.609) BS01 2M9 N/A N/A N/A 31243995
    12 6m87:G (2.609) BS01 2M9 N/A N/A N/A 31243995
    13 6m87:H (2.609) BS01 2M9 N/A N/A N/A 31243995
    14 6m87:H (2.609) BS02 2M9 N/A N/A N/A 31243995
    15 6m87:I (2.609) BS01 2M9 N/A N/A N/A 31243995
    16 6m87:J (2.609) BS01 2M9 N/A N/A N/A 31243995
    17 6m87:K (2.609) BS01 2M9 N/A N/A N/A 31243995
    18 6m87:L (2.609) BS01 2M9 N/A N/A N/A 31243995
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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