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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1rr2:A (2.0) BS02 2KT 2.1.3.1 GO:0003824 ... Q70AC7 15329673
    2 1tzk:A (2.0) BS02 2KT 3.5.99.7 GO:0008660 ... Q00740 15491139
    3 1tzk:C (2.0) BS02 2KT 3.5.99.7 GO:0008660 ... Q00740 15491139
    4 2q1a:X (2.5) BS02 2KT 4.2.1.141 GO:0000287 ... Q97UA0 18448118
    5 2q1c:X (2.8) BS02 2KT 4.2.1.141 GO:0000287 ... Q97UA0 18448118
    6 2uyn:A (1.6) BS01 2KT 3.5.4.- GO:0005829 ... P0AGL2 17506874 PDBbind: -logKd/Ki=2.70, Kd=2mM
    7 2uyn:B (1.6) BS01 2KT 3.5.4.- GO:0005829 ... P0AGL2 17506874 PDBbind: -logKd/Ki=2.70, Kd=2mM
    8 2uyn:B (1.6) BS02 2KT 3.5.4.- GO:0005829 ... P0AGL2 17506874 PDBbind: -logKd/Ki=2.70, Kd=2mM
    9 2uyn:C (1.6) BS01 2KT 3.5.4.- GO:0005829 ... P0AGL2 17506874
    10 2uyn:C (1.6) BS02 2KT 3.5.4.- GO:0005829 ... P0AGL2 17506874
    11 3tdf:A (1.99) BS01 2KT 4.3.3.7 GO:0005737 ... D0CFC3 N/A
    12 3tdf:B (1.99) BS01 2KT 4.3.3.7 GO:0005737 ... D0CFC3 N/A
    13 4b5t:A (1.923) BS03 2KT 4.1.2.52 GO:0003824 ... B1IS70 22908224 PDBbind: -logKd/Ki=3.33, Kd=0.47mM
    14 4b5t:B (1.923) BS03 2KT 4.1.2.52 GO:0003824 ... B1IS70 22908224
    15 4woq:C (2.2) BS01 2KT 4.1.3.3 GO:0005737 ... D5Q364 N/A
    16 4woq:D (2.2) BS01 2KT 4.1.3.3 GO:0005737 ... D5Q364 N/A
    17 4woq:E (2.2) BS01 2KT 4.1.3.3 GO:0005737 ... D5Q364 N/A
    18 4woq:F (2.2) BS01 2KT 4.1.3.3 GO:0005737 ... D5Q364 N/A
    19 4woq:H (2.2) BS01 2KT 4.1.3.3 GO:0005737 ... D5Q364 N/A
    20 8biu:A (1.899) BS02 2KT 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    21 8jdt:A (1.55) BS02 2KT 1.1.2.4 GO:0003824 ... Q7TNG8 37863926
    22 8y1j:A (2.3) BS01 2KT 4.3.1.19 GO:0003941 ... Q9I6G0 38417345
    23 8y1j:A (2.3) BS02 2KT 4.3.1.19 GO:0003941 ... Q9I6G0 38417345
    24 8y1j:B (2.3) BS01 2KT 4.3.1.19 GO:0003941 ... Q9I6G0 38417345
    25 9bk8:A (1.67) BS01 2KT N/A N/A A0A069Q0R8 N/A
    26 9evv:D (2.44) BS03 2KT N/A N/A B5ZZ34 39126499
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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