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BioLiP
Download all results in tab-seperated text for 75 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4n07:A (1.87) BS01 2J9 ? GO:0015276 ... P19491 24131202 MOAD: Kd=0.35uM
    PDBbind: -logKd/Ki=6.46, Kd=0.35uM
    BindingDB: EC50=900nM
    2 4n07:B (1.87) BS01 2J9 ? GO:0015276 ... P19491 24131202 MOAD: Kd=0.35uM
    PDBbind: -logKd/Ki=6.46, Kd=0.35uM
    BindingDB: EC50=900nM
    3 4n07:B (1.87) BS04 2J9 ? GO:0015276 ... P19491 24131202 MOAD: Kd=0.35uM
    PDBbind: -logKd/Ki=6.46, Kd=0.35uM
    BindingDB: EC50=900nM
    4 4n07:C (1.87) BS01 2J9 ? GO:0015276 ... P19491 24131202 MOAD: Kd=0.35uM
    BindingDB: EC50=900nM
    5 4n07:C (1.87) BS02 2J9 ? GO:0015276 ... P19491 24131202 MOAD: Kd=0.35uM
    BindingDB: EC50=900nM
    6 5mfq:A (1.9) BS01 2J9 ? GO:0015276 ... P22756 28360094
    7 5mfq:A (1.9) BS02 2J9 ? GO:0015276 ... P22756 28360094
    8 5mfq:B (1.9) BS01 2J9 ? GO:0015276 ... P22756 28360094
    9 5mfq:B (1.9) BS02 2J9 ? GO:0015276 ... P22756 28360094
    10 8bsu:A (2.9) BS01 2J9 ? GO:0015276 ... P42264 38145505
    11 8bsu:A (2.9) BS04 2J9 ? GO:0015276 ... P42264 38145505
    12 8bsu:B (2.9) BS01 2J9 ? GO:0015276 ... P42264 38145505
    13 8bsu:B (2.9) BS04 2J9 ? GO:0015276 ... P42264 38145505
    14 8bsu:C (2.9) BS01 2J9 ? GO:0015276 ... P42264 38145505
    15 8bsu:C (2.9) BS02 2J9 ? GO:0015276 ... P42264 38145505
    16 8bsu:D (2.9) BS01 2J9 ? GO:0015276 ... P42264 38145505
    17 8bsu:D (2.9) BS02 2J9 ? GO:0015276 ... P42264 38145505
    18 8bsu:E (2.9) BS01 2J9 ? GO:0015276 ... P42264 38145505
    19 8bsu:E (2.9) BS02 2J9 ? GO:0015276 ... P42264 38145505
    20 8bsu:F (2.9) BS01 2J9 ? GO:0015276 ... P42264 38145505
    21 8bsu:F (2.9) BS05 2J9 ? GO:0015276 ... P42264 38145505
    22 8bsu:G (2.9) BS01 2J9 ? GO:0015276 ... P42264 38145505
    23 8bsu:G (2.9) BS02 2J9 ? GO:0015276 ... P42264 38145505
    24 8bsu:H (2.9) BS01 2J9 ? GO:0015276 ... P42264 38145505
    25 8bsu:H (2.9) BS02 2J9 ? GO:0015276 ... P42264 38145505
    26 8fwq:A (3.96) BS01 2J9 ? GO:0005216 ... P42260 36857176
    27 8fwq:A (3.96) BS02 2J9 ? GO:0005216 ... P42260 36857176
    28 8fwq:B (3.96) BS01 2J9 ? GO:0005216 ... P42260 36857176
    29 8fwq:B (3.96) BS02 2J9 ? GO:0005216 ... P42260 36857176
    30 8fwq:C (3.96) BS01 2J9 ? GO:0005216 ... P42260 36857176
    31 8fwq:C (3.96) BS02 2J9 ? GO:0005216 ... P42260 36857176
    32 8fwq:D (3.96) BS01 2J9 ? GO:0005216 ... P42260 36857176
    33 8fwq:D (3.96) BS02 2J9 ? GO:0005216 ... P42260 36857176
    34 8fws:A (3.23) BS01 2J9 ? GO:0005216 ... P42260 36857176
    35 8fws:A (3.23) BS02 2J9 ? GO:0005216 ... P42260 36857176
    36 8fws:B (3.23) BS01 2J9 ? GO:0005216 ... P42260 36857176
    37 8fws:B (3.23) BS02 2J9 ? GO:0005216 ... P42260 36857176
    38 8fws:C (3.23) BS01 2J9 ? GO:0005216 ... P42260 36857176
    39 8fws:C (3.23) BS02 2J9 ? GO:0005216 ... P42260 36857176
    40 8fws:D (3.23) BS01 2J9 ? GO:0005216 ... P42260 36857176
    41 8fws:D (3.23) BS02 2J9 ? GO:0005216 ... P42260 36857176
    42 8fwu:A (3.18) BS02 2J9 ? GO:0005216 ... P42260 36857176
    43 8fwu:A (3.18) BS03 2J9 ? GO:0005216 ... P42260 36857176
    44 8fwu:B (3.18) BS01 2J9 ? GO:0005216 ... P42260 36857176
    45 8fwu:B (3.18) BS03 2J9 ? GO:0005216 ... P42260 36857176
    46 8fwu:C (3.18) BS01 2J9 ? GO:0005216 ... P42260 36857176
    47 8fwu:C (3.18) BS02 2J9 ? GO:0005216 ... P42260 36857176
    48 8fwu:D (3.18) BS01 2J9 ? GO:0005216 ... P42260 36857176
    49 8fwu:D (3.18) BS02 2J9 ? GO:0005216 ... P42260 36857176
    50 8fww:A (3.1) BS01 2J9 ? GO:0005216 ... P42260 36857176
    51 8fww:A (3.1) BS03 2J9 ? GO:0005216 ... P42260 36857176
    52 8fww:B (3.1) BS02 2J9 ? GO:0005216 ... P42260 36857176
    53 8fww:B (3.1) BS03 2J9 ? GO:0005216 ... P42260 36857176
    54 8fww:C (3.1) BS01 2J9 ? GO:0005216 ... P42260 36857176
    55 8fww:C (3.1) BS02 2J9 ? GO:0005216 ... P42260 36857176
    56 8fww:D (3.1) BS01 2J9 ? GO:0005216 ... P42260 36857176
    57 8fww:D (3.1) BS02 2J9 ? GO:0005216 ... P42260 36857176
    58 8r32:A (1.6) BS02 2J9 N/A N/A P42260 38369668
    59 8r32:B (1.6) BS02 2J9 N/A N/A P42260 38369668
    60 9b36:A (4.29) BS02 2J9 ? N/A P42260 38778115
    61 9b36:A (4.29) BS06 2J9 ? N/A P42260 38778115
    62 9b36:B (4.29) BS01 2J9 ? N/A P42260 38778115
    63 9b36:B (4.29) BS03 2J9 ? N/A P42260 38778115
    64 9b36:C (4.29) BS02 2J9 ? N/A P42260 38778115
    65 9b36:C (4.29) BS04 2J9 ? N/A P42260 38778115
    66 9b36:D (4.29) BS01 2J9 ? N/A P42260 38778115
    67 9b36:D (4.29) BS02 2J9 ? N/A P42260 38778115
    68 9b37:A (6.66) BS01 2J9 ? N/A P42260 38778115
    69 9b37:A (6.66) BS05 2J9 ? N/A P42260 38778115
    70 9b37:B (6.66) BS01 2J9 ? N/A P42260 38778115
    71 9b37:B (6.66) BS03 2J9 ? N/A P42260 38778115
    72 9b37:C (6.66) BS01 2J9 ? N/A P42260 38778115
    73 9b37:C (6.66) BS03 2J9 ? N/A P42260 38778115
    74 9b37:D (6.66) BS01 2J9 ? N/A P42260 38778115
    75 9b37:D (6.66) BS03 2J9 ? N/A P42260 38778115
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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