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BioLiP
Download all results in tab-seperated text for 73 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bir:A (1.8) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 8844843 MOAD: Kd=138uM
    2 1bir:B (1.8) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 8844843 MOAD: Kd=138uM
    3 1bu4:A (1.9) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10373011
    4 1bvi:A (1.9) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    5 1bvi:B (1.9) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    6 1bvi:C (1.9) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    7 1bvi:C (1.9) BS02 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    8 1bvi:D (1.9) BS02 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    9 1ch0:A (2.3) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10600381
    10 1ch0:C (2.3) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10600381
    11 1det:A (1.8) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 8679590 MOAD: Kd=50uM
    PDBbind: -logKd/Ki=4.30, Kd=50uM
    12 1fut:A (2.0) BS01 2GP 4.6.1.24 GO:0003723 ... P10282 8386773
    13 1fys:A (2.0) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    14 1fzu:A (1.8) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    15 1g02:A (1.86) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    16 1gmp:A (1.7) BS01 2GP 4.6.1.24 GO:0003723 ... P05798 15299531
    17 1gmp:B (1.7) BS01 2GP 4.6.1.24 GO:0003723 ... P05798 15299531
    18 1gmr:A (1.77) BS01 2GP 4.6.1.24 GO:0003723 ... P05798 15299531
    19 1gmr:B (1.77) BS01 2GP 4.6.1.24 GO:0003723 ... P05798 15299531
    20 1hyf:A (1.7) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11453993
    21 1hz1:A (1.8) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11453993
    22 1i0v:A (1.234) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11453993
    23 1i0x:A (1.65) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11453993
    24 1i0x:B (1.65) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11453993
    25 1i0x:C (1.65) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11453993
    26 1i0x:C (1.65) BS02 2GP 4.6.1.24 GO:0001411 ... P00651 11453993
    27 1i0x:D (1.65) BS03 2GP 4.6.1.24 GO:0001411 ... P00651 11453993
    28 1i2e:A (1.8) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    29 1i2f:A (1.95) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    30 1i2g:A (1.85) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    31 1i3f:A (2.35) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    32 1i3i:A (1.76) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    33 1lra:A (1.9) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 7906540
    34 1rge:A (1.15) BS01 2GP 4.6.1.24 GO:0003723 ... P05798 15299705
    35 1rgl:A (2.0) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 1350642 MOAD: Kd=37uM
    PDBbind: -logKd/Ki=4.43, Kd=37uM
    36 1rhl:A (1.95) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10600109
    37 1rnt:A (1.9) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 N/A MOAD: Kd=6.5uM
    PDBbind: -logKd/Ki=5.19, Kd=6.5uM
    38 1trp:A (2.4) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 8125111
    39 1trp:B (2.4) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 8125111
    40 1trq:A (2.3) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 8125111
    41 1trq:B (2.3) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 8125111
    42 2aad:A (2.0) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 1445870
    43 2aad:B (2.0) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 1445870
    44 2bir:A (2.3) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 9092491
    45 2bu4:A (1.95) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10373011
    46 2hoh:A (1.9) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    47 2hoh:B (1.9) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    48 2hoh:C (1.9) BS02 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    49 2hoh:C (1.9) BS03 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    50 2hoh:D (1.9) BS02 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    51 3bir:A (1.8) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 9466938 MOAD: Kd=112uM
    52 3bu4:A (1.77) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10373011
    53 3dgy:B (1.8) BS01 2GP 3.1.4.8 GO:0003723 ... Q53752 19558492
    54 3hoh:A (1.95) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    55 3hoh:B (1.95) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    56 3hoh:C (1.95) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    57 3hoh:C (1.95) BS02 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    58 3hoh:D (1.95) BS02 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    59 3syu:A (1.95) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 22505257 MOAD: Kd=50uM
    60 4bu4:A (1.8) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10373011
    61 4hoh:A (2.05) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    62 4hoh:B (2.05) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    63 4hoh:C (2.05) BS02 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    64 4hoh:C (2.05) BS03 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    65 4hoh:D (2.05) BS02 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    66 5bir:A (2.0) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 9466938 MOAD: Kd=255uM
    67 5bir:B (2.0) BS02 2GP 4.6.1.24 GO:0001411 ... P00651 9466938 MOAD: Kd=255uM
    68 5bu4:A (1.77) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10373011
    69 5hoh:A (2.0) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    70 5hoh:B (2.0) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    71 5hoh:C (2.0) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    72 5hoh:C (2.0) BS02 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    73 5hoh:D (2.0) BS02 2GP 4.6.1.24 GO:0001411 ... P00651 10211818
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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