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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1jz2:A (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    2 1jz2:B (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    3 1jz2:C (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    4 1jz2:D (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    5 4mol:A (2.0) BS02 2FG 1.1.3.10 GO:0000166 ... Q7ZA32 24466218
    6 4mol:B (2.0) BS02 2FG 1.1.3.10 GO:0000166 ... Q7ZA32 24466218
    7 4mol:C (2.0) BS02 2FG 1.1.3.10 GO:0000166 ... Q7ZA32 24466218
    8 4mol:D (2.0) BS02 2FG 1.1.3.10 GO:0000166 ... Q7ZA32 24466218
    9 4moq:A (1.6) BS02 2FG 1.1.3.10 GO:0000166 ... Q7ZA32 24466218
    10 4moq:A (1.6) BS03 2FG 1.1.3.10 GO:0000166 ... Q7ZA32 24466218
    11 4moq:B (1.6) BS02 2FG 1.1.3.10 GO:0000166 ... Q7ZA32 24466218
    12 4mos:A (1.8) BS03 2FG 1.1.3.10 GO:0000166 ... Q7ZA32 24466218
    13 4v44:A (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    14 4v44:B (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    15 4v44:C (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    16 4v44:D (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    17 4v44:E (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    18 4v44:F (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    19 4v44:G (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    20 4v44:H (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    21 4v44:I (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    22 4v44:J (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    23 4v44:K (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    24 4v44:L (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    25 4v44:M (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    26 4v44:N (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    27 4v44:O (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    28 4v44:P (2.7) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    29 4v45:A (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    30 4v45:B (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    31 4v45:C (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    32 4v45:D (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    33 4v45:E (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    34 4v45:F (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    35 4v45:G (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    36 4v45:H (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    37 4v45:I (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    38 4v45:J (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    39 4v45:K (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    40 4v45:L (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    41 4v45:M (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    42 4v45:N (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    43 4v45:O (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    44 4v45:P (2.6) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    45 6teq:A (1.44) BS02 2FG 2.7.1.6 GO:0004335 ... B7GUI0 32619452
    46 6teq:B (1.44) BS01 2FG 2.7.1.6 GO:0004335 ... B7GUI0 32619452
    47 6teq:C (1.44) BS02 2FG 2.7.1.6 GO:0004335 ... B7GUI0 32619452
    48 6teq:D (1.44) BS01 2FG 2.7.1.6 GO:0004335 ... B7GUI0 32619452
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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