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BioLiP
Download all results in tab-seperated text for 186 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2y00:A (2.5) BS03 2CV ? GO:0004930 ... P07700 21228877
    2 2y00:A (2.5) BS04 2CV ? GO:0004930 ... P07700 21228877
    3 2y00:A (2.5) BS05 2CV ? GO:0004930 ... P07700 21228877
    4 2y00:B (2.5) BS02 2CV ? GO:0004930 ... P07700 21228877
    5 2y00:B (2.5) BS05 2CV ? GO:0004930 ... P07700 21228877
    6 2y00:B (2.5) BS06 2CV ? GO:0004930 ... P07700 21228877
    7 2y01:A (2.6) BS03 2CV ? GO:0004930 ... P07700 21228877
    8 2y01:A (2.6) BS04 2CV ? GO:0004930 ... P07700 21228877
    9 2y01:A (2.6) BS05 2CV ? GO:0004930 ... P07700 21228877
    10 2y01:B (2.6) BS03 2CV ? GO:0004930 ... P07700 21228877
    11 2y01:B (2.6) BS04 2CV ? GO:0004930 ... P07700 21228877
    12 2y01:B (2.6) BS05 2CV ? GO:0004930 ... P07700 21228877
    13 2y02:A (2.6) BS03 2CV ? GO:0004930 ... P07700 21228877
    14 2y02:A (2.6) BS04 2CV ? GO:0004930 ... P07700 21228877
    15 2y02:A (2.6) BS05 2CV ? GO:0004930 ... P07700 21228877
    16 2y02:A (2.6) BS08 2CV ? GO:0004930 ... P07700 21228877
    17 2y02:B (2.6) BS02 2CV ? GO:0004930 ... P07700 21228877
    18 2y02:B (2.6) BS05 2CV ? GO:0004930 ... P07700 21228877
    19 2y02:B (2.6) BS06 2CV ? GO:0004930 ... P07700 21228877
    20 2y03:A (2.85) BS02 2CV ? GO:0004930 ... P07700 21228877
    21 2y03:A (2.85) BS03 2CV ? GO:0004930 ... P07700 21228877
    22 2y03:A (2.85) BS06 2CV ? GO:0004930 ... P07700 21228877
    23 2y03:B (2.85) BS03 2CV ? GO:0004930 ... P07700 21228877
    24 2y03:B (2.85) BS04 2CV ? GO:0004930 ... P07700 21228877
    25 2y04:A (3.05) BS03 2CV ? GO:0004930 ... P07700 21228877
    26 2y04:A (3.05) BS04 2CV ? GO:0004930 ... P07700 21228877
    27 2y04:B (3.05) BS02 2CV ? GO:0004930 ... P07700 21228877
    28 2y04:B (3.05) BS05 2CV ? GO:0004930 ... P07700 21228877
    29 2ycw:A (3.0) BS02 2CV ? GO:0004930 ... P07700 21540331
    30 2ycw:A (3.0) BS03 2CV ? GO:0004930 ... P07700 21540331
    31 2ycw:A (3.0) BS04 2CV ? GO:0004930 ... P07700 21540331
    32 2ycw:B (3.0) BS01 2CV ? GO:0004930 ... P07700 21540331
    33 2ycw:B (3.0) BS03 2CV ? GO:0004930 ... P07700 21540331
    34 2ycw:B (3.0) BS04 2CV ? GO:0004930 ... P07700 21540331
    35 3zjz:A (2.92) BS01 2CV ? GO:0005216 ... A0L5S6 24051986
    36 3zjz:B (2.92) BS01 2CV ? GO:0005216 ... A0L5S6 24051986
    37 3zjz:C (2.92) BS01 2CV ? GO:0005216 ... A0L5S6 24051986
    38 3zjz:C (2.92) BS02 2CV ? GO:0005216 ... A0L5S6 24051986
    39 3zjz:D (2.92) BS01 2CV ? GO:0005216 ... A0L5S6 24051986
    40 3zpq:A (2.8) BS03 2CV ? GO:0004930 ... P07700 23517028
    41 3zpq:A (2.8) BS04 2CV ? GO:0004930 ... P07700 23517028
    42 3zpq:A (2.8) BS05 2CV ? GO:0004930 ... P07700 23517028
    43 3zpq:A (2.8) BS06 2CV ? GO:0004930 ... P07700 23517028
    44 3zpq:A (2.8) BS09 2CV ? GO:0004930 ... P07700 23517028
    45 3zpq:B (2.8) BS04 2CV ? GO:0004930 ... P07700 23517028
    46 3zpq:B (2.8) BS05 2CV ? GO:0004930 ... P07700 23517028
    47 3zpq:B (2.8) BS06 2CV ? GO:0004930 ... P07700 23517028
    48 3zpr:A (2.7) BS04 2CV ? GO:0004930 ... P07700 23517028
    49 3zpr:B (2.7) BS05 2CV ? GO:0004930 ... P07700 23517028
    50 3zpr:B (2.7) BS06 2CV ? GO:0004930 ... P07700 23517028
    51 3zpr:B (2.7) BS07 2CV ? GO:0004930 ... P07700 23517028
    52 3zpr:B (2.7) BS08 2CV ? GO:0004930 ... P07700 23517028
    53 4ami:A (3.2) BS02 2CV ? GO:0004930 ... P07700 22579251
    54 4amj:A (2.3) BS02 2CV ? GO:0004930 ... P07700 22579251
    55 4amj:A (2.3) BS03 2CV ? GO:0004930 ... P07700 22579251
    56 4amj:A (2.3) BS04 2CV ? GO:0004930 ... P07700 22579251
    57 4amj:A (2.3) BS05 2CV ? GO:0004930 ... P07700 22579251
    58 4cbc:A (2.664) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    59 4cbc:A (2.664) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    60 4cbc:B (2.664) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    61 4cbc:B (2.664) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    62 4cbc:B (2.664) BS03 2CV ? GO:0005216 ... A0L5S6 24850863
    63 4cbc:C (2.664) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    64 4cbc:D (2.664) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    65 4cbc:D (2.664) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    66 4oxs:A (2.8) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    67 4oxs:A (2.8) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    68 4oxs:B (2.8) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    69 4oxs:C (2.8) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    70 4oxs:D (2.8) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    71 4p2z:B (3.08) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    72 4p2z:B (3.08) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    73 4p30:A (3.31) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    74 4p30:B (3.31) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    75 4p30:C (3.31) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    76 4p30:C (3.31) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    77 4p30:D (3.31) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    78 4p9o:A (2.89) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    79 4p9o:B (2.89) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    80 4p9o:B (2.89) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    81 4p9o:C (2.89) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    82 4p9o:D (2.89) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    83 4p9p:B (2.91) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    84 4p9p:D (2.91) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    85 4pa3:A (3.25) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    86 4pa3:B (3.25) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    87 4pa3:B (3.25) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    88 4pa3:C (3.25) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    89 4pa3:D (3.25) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    90 4pa3:D (3.25) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    91 4pa4:A (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    92 4pa4:B (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    93 4pa4:C (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    94 4pa4:C (3.02) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    95 4pa4:D (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    96 4pa6:A (3.36) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    97 4pa6:B (3.36) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    98 4pa6:B (3.36) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    99 4pa6:C (3.36) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    100 4pa6:D (3.36) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    101 4pa7:A (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    102 4pa7:B (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    103 4pa7:B (3.02) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    104 4pa7:C (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    105 4pa7:D (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    106 4pa7:D (3.02) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    107 4pa9:A (3.43) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    108 4pa9:B (3.43) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    109 4pa9:B (3.43) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    110 4pa9:C (3.43) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    111 4pa9:D (3.43) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    112 4pa9:D (3.43) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    113 4x88:A (3.5) BS01 2CV ? GO:0005216 ... A0L5S6 26873592
    114 4x88:B (3.5) BS01 2CV ? GO:0005216 ... A0L5S6 26873592
    115 4x88:B (3.5) BS02 2CV ? GO:0005216 ... A0L5S6 26873592
    116 4x88:C (3.5) BS01 2CV ? GO:0005216 ... A0L5S6 26873592
    117 4x88:D (3.5) BS01 2CV ? GO:0005216 ... A0L5S6 26873592
    118 4x89:B (2.62) BS01 2CV ? GO:0005216 ... A0L5S6 26873592
    119 4x89:B (2.62) BS02 2CV ? GO:0005216 ... A0L5S6 26873592
    120 4x8a:B (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 26873592
    121 4x8a:B (3.02) BS02 2CV ? GO:0005216 ... A0L5S6 26873592
    122 4x8a:C (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 26873592
    123 4x8a:D (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 26873592
    124 5bzb:B (2.7) BS01 2CV ? GO:0005216 ... A0L5S6 26873592
    125 5bzb:B (2.7) BS02 2CV ? GO:0005216 ... A0L5S6 26873592
    126 5bzb:C (2.7) BS01 2CV ? GO:0005216 ... A0L5S6 26873592
    127 5bzb:D (2.7) BS01 2CV ? GO:0005216 ... A0L5S6 26873592
    128 5bzb:D (2.7) BS02 2CV ? GO:0005216 ... A0L5S6 26873592
    129 6csb:A (2.394) BS04 2CV 1.14.14.- GO:0004497 ... P10635 N/A
    130 6csb:B (2.394) BS05 2CV 1.14.14.- GO:0004497 ... P10635 N/A
    131 6csb:C (2.394) BS04 2CV 1.14.14.- GO:0004497 ... P10635 N/A
    132 6h7j:A (2.8) BS02 2CV ? GO:0004930 ... P07700 31072904
    133 6h7j:A (2.8) BS03 2CV ? GO:0004930 ... P07700 31072904
    134 6h7j:A (2.8) BS04 2CV ? GO:0004930 ... P07700 31072904
    135 6h7j:A (2.8) BS05 2CV ? GO:0004930 ... P07700 31072904
    136 6h7j:B (2.8) BS01 2CV ? GO:0004930 ... P07700 31072904
    137 6h7l:A (2.7) BS01 2CV ? GO:0004930 ... P07700 31072904
    138 6h7l:A (2.7) BS02 2CV ? GO:0004930 ... P07700 31072904
    139 6h7l:A (2.7) BS03 2CV ? GO:0004930 ... P07700 31072904
    140 6h7l:A (2.7) BS04 2CV ? GO:0004930 ... P07700 31072904
    141 6h7l:B (2.7) BS01 2CV ? GO:0004930 ... P07700 31072904
    142 6h7l:B (2.7) BS02 2CV ? GO:0004930 ... P07700 31072904
    143 6h7l:B (2.7) BS03 2CV ? GO:0004930 ... P07700 31072904
    144 6h7l:B (2.7) BS04 2CV ? GO:0004930 ... P07700 31072904
    145 6h7m:A (2.76) BS01 2CV ? GO:0004930 ... P07700 31072904
    146 6h7m:A (2.76) BS02 2CV ? GO:0004930 ... P07700 31072904
    147 6h7m:A (2.76) BS03 2CV ? GO:0004930 ... P07700 31072904
    148 6h7m:A (2.76) BS05 2CV ? GO:0004930 ... P07700 31072904
    149 6h7m:A (2.76) BS06 2CV ? GO:0004930 ... P07700 31072904
    150 6h7m:B (2.76) BS01 2CV ? GO:0004930 ... P07700 31072904
    151 6h7m:B (2.76) BS02 2CV ? GO:0004930 ... P07700 31072904
    152 6h7m:B (2.76) BS03 2CV ? GO:0004930 ... P07700 31072904
    153 6h7m:B (2.76) BS04 2CV ? GO:0004930 ... P07700 31072904
    154 6h7n:A (2.5) BS02 2CV ? GO:0004930 ... P07700 N/A
    155 6h7n:A (2.5) BS03 2CV ? GO:0004930 ... P07700 N/A
    156 6h7n:A (2.5) BS04 2CV ? GO:0004930 ... P07700 N/A
    157 6h7n:B (2.5) BS01 2CV ? GO:0004930 ... P07700 N/A
    158 6h7n:B (2.5) BS02 2CV ? GO:0004930 ... P07700 N/A
    159 6h7n:B (2.5) BS04 2CV ? GO:0004930 ... P07700 N/A
    160 6h7o:A (2.8) BS02 2CV ? GO:0004930 ... P07700 31072904
    161 6h7o:A (2.8) BS03 2CV ? GO:0004930 ... P07700 31072904
    162 6h7o:A (2.8) BS04 2CV ? GO:0004930 ... P07700 31072904
    163 6h7o:A (2.8) BS05 2CV ? GO:0004930 ... P07700 31072904
    164 6h7o:B (2.8) BS01 2CV ? GO:0004930 ... P07700 31072904
    165 6h7o:B (2.8) BS02 2CV ? GO:0004930 ... P07700 31072904
    166 6h7o:B (2.8) BS04 2CV ? GO:0004930 ... P07700 31072904
    167 6ibl:A (2.7) BS02 2CV ? GO:0004930 ... P07700
    P0AA25    		 32555462
    168 6ibl:A (2.7) BS03 2CV ? GO:0004930 ... P07700
    P0AA25    		 32555462
    169 6ibl:A (2.7) BS04 2CV ? GO:0004930 ... P07700
    P0AA25    		 32555462
    170 6ibl:A (2.7) BS05 2CV ? GO:0004930 ... P07700
    P0AA25    		 32555462
    171 6ibl:A (2.7) BS06 2CV ? GO:0004930 ... P07700
    P0AA25    		 32555462
    172 6ibl:B (2.7) BS01 2CV ? GO:0004930 ... P07700
    P0AA25    		 32555462
    173 6ibl:B (2.7) BS02 2CV ? GO:0004930 ... P07700
    P0AA25    		 32555462
    174 6ibl:B (2.7) BS04 2CV ? GO:0004930 ... P07700
    P0AA25    		 32555462
    175 6ibl:B (2.7) BS05 2CV ? GO:0004930 ... P07700
    P0AA25    		 32555462
    176 6sx5:A (2.2) BS01 2CV ? GO:0001518 ... A0L5S6 33503406
    177 6sx7:A (2.5) BS01 2CV ? GO:0001518 ... A0L5S6 33503406
    178 6sxc:A (2.5) BS01 2CV ? GO:0001518 ... A0L5S6 33503406
    179 6sxc:A (2.5) BS03 2CV ? GO:0001518 ... A0L5S6 33503406
    180 6sxe:A (2.6) BS01 2CV ? GO:0001518 ... A0L5S6 33503406
    181 6sxf:A (2.839) BS01 2CV ? GO:0001518 ... A0L5S6 33503406
    182 6sxf:B (2.839) BS01 2CV ? GO:0001518 ... A0L5S6 33503406
    183 6sxg:A (2.4) BS01 2CV ? GO:0001518 ... A0L5S6 33503406
    184 6yz0:A (2.3) BS01 2CV ? GO:0001518 ... A0L5S6 33089780
    185 6yz2:A (2.2) BS01 2CV ? GO:0001518 ... A0L5S6 33089780
    186 6z8c:A (3.2) BS01 2CV ? GO:0001518 ... A0L5S6 33503406
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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