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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4p1u:A (2.52) BS01 21G ? N/A P31345 25019388 PDBbind: -logKd/Ki=8.52, Kd<0.003uM
    2 5wl0:A (2.4) BS01 21G ? GO:0003723 ... Q67296 28839261 MOAD: Kd=0.67nM
    PDBbind: -logKd/Ki=9.17, Kd=0.67nM
    3 6euv:A (2.7) BS01 21G ? N/A P31345 29202182 PDBbind: -logKd/Ki=8.62, Kd=2.4nM
    4 6euv:A (2.7) BS02 21G ? N/A P31345 29202182 PDBbind: -logKd/Ki=8.62, Kd=2.4nM
    5 6euv:C (2.7) BS01 21G ? N/A P31345 29202182
    6 6euv:C (2.7) BS02 21G ? N/A P31345 29202182
    7 6euv:F (2.7) BS01 21G ? N/A P31345 29202182
    8 6euv:F (2.7) BS02 21G ? N/A P31345 29202182
    9 6euv:I (2.7) BS01 21G ? N/A P31345 29202182
    10 6euv:I (2.7) BS02 21G ? N/A P31345 29202182
    11 7as0:A (1.55) BS01 21G ? N/A C3W5X5 33673017
    12 7as1:A (1.5) BS01 21G ? N/A C3W5X5 33673017
    13 7as2:A (1.75) BS01 21G ? N/A C3W5X5 33673017
    14 7as3:A (1.65) BS01 21G ? N/A C3W5X5 33673017
    15 7as3:A (1.65) BS02 21G ? N/A C3W5X5 33673017
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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