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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4zdy:A (2.02) BS02 1YN ? GO:0004497 ... A6ZSR0 27188873 MOAD: Kd=0.13uM
    2 4ze2:A (2.3) BS02 1YN ? GO:0004497 ... A6ZSR0 27188873 MOAD: Kd=0.13uM
    3 5eqb:A (2.19) BS02 1YN 1.14.14.154 GO:0004497 ... P10614 24613931
    4 5esg:A (1.981) BS01 1YN 1.14.13.70 GO:0004497 ... A6ZSR0 29263059
    5 5esh:A (2.15) BS02 1YN 1.14.13.70 GO:0004497 ... A6ZSR0 29263059
    6 5esk:A (2.24) BS01 1YN ? GO:0004497 ... A6ZSR0 29263059
    7 5esl:A (2.35) BS01 1YN ? GO:0004497 ... A6ZSR0 N/A
    8 5jlc:A (2.4) BS02 1YN 1.14.14.154 GO:0004497 ... P50859 30126961
    9 5v5z:A (2.9) BS02 1YN 1.14.14.154 GO:0001766 ... P10613 30126961
    10 6ayc:A (2.6) BS02 1YN ? GO:0004497 ... A0A2H4A2U9 29284029
    11 7rya:A (2.1) BS02 1YN 1.14.14.154 GO:0004497 ... P10614 34829185
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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