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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ly3:A (1.9) BS01 1YJ N/A GO:0009058 ... N/A 23898784
    2 4ly3:B (1.9) BS01 1YJ N/A GO:0009058 ... N/A 23898784
    3 4yfy:A (1.9) BS02 1YJ ? GO:0004479 ... M9P0Q2 25752909
    4 4yfy:B (1.9) BS02 1YJ ? GO:0004479 ... M9P0Q2 25752909
    5 5uil:A (2.2) BS01 1YJ ? GO:0003824 ... U3GK13 28263875
    6 5uil:B (2.2) BS01 1YJ ? GO:0003824 ... U3GK13 28263875
    7 5vys:A (2.2) BS01 1YJ 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    8 5vys:B (2.2) BS01 1YJ 2.1.2.14 GO:0004479 ... F8WJP6 28636341
    9 6ci5:A (2.00003) BS02 1YJ N/A GO:0009058 ... N/A 30346688
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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