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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4lvt:A (2.05) BS01 1XJ ? GO:0042981 ... P10415 23291630 PDBbind: -logKd/Ki=10.36, Ki=44pM
    BindingDB: Ki=<1.000000nM, IC50=<15nM
    2 4lvt:B (2.05) BS01 1XJ ? GO:0042981 ... P10415 23291630 BindingDB: Ki=<1.000000nM, IC50=<15nM
    3 4qnq:A (2.3) BS01 1XJ ? GO:0001541 ... P53563 N/A
    4 4qnq:A (2.3) BS02 1XJ ? GO:0001541 ... P53563 N/A
    5 4qnq:B (2.3) BS01 1XJ ? GO:0001541 ... P53563 N/A
    6 4qnq:B (2.3) BS02 1XJ ? GO:0001541 ... P53563 N/A
    7 4qnq:C (2.3) BS01 1XJ ? GO:0001541 ... P53563 N/A
    8 4qnq:D (2.3) BS01 1XJ ? GO:0001541 ... P53563 N/A
    9 4qnq:E (2.3) BS01 1XJ ? GO:0001541 ... P53563 N/A
    10 4qnq:E (2.3) BS02 1XJ ? GO:0001541 ... P53563 N/A
    11 4qnq:F (2.3) BS01 1XJ ? GO:0001541 ... P53563 N/A
    12 4qnq:G (2.3) BS01 1XJ ? GO:0001541 ... P53563 N/A
    13 4qnq:G (2.3) BS02 1XJ ? GO:0001541 ... P53563 N/A
    14 4qnq:H (2.3) BS01 1XJ ? GO:0001541 ... P53563 N/A
    15 4qnq:I (2.3) BS01 1XJ ? GO:0001541 ... P53563 N/A
    16 4qnq:J (2.3) BS01 1XJ ? GO:0001541 ... P53563 N/A
    17 4qnq:J (2.3) BS02 1XJ ? GO:0001541 ... P53563 N/A
    18 4qnq:K (2.3) BS01 1XJ ? GO:0001541 ... P53563 N/A
    19 4qnq:K (2.3) BS02 1XJ ? GO:0001541 ... P53563 N/A
    20 4qnq:L (2.3) BS01 1XJ ? GO:0001541 ... P53563 N/A
    21 6qgh:A (2.0) BS01 1XJ ? GO:0042981 ... P10415
    Q07817    		 31459977
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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