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BioLiP
Download all results in tab-seperated text for 127 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1r4p:B (1.77) BS01 1PS ? GO:0005576 ... P09386 15075327
    2 1r4p:C (1.77) BS02 1PS ? GO:0005576 ... P09386 15075327
    3 1r4p:D (1.77) BS01 1PS ? GO:0005576 ... P09386 15075327
    4 1r4p:F (1.77) BS01 1PS ? GO:0005576 ... P09386 15075327
    5 2ga4:B (1.8) BS01 1PS ? GO:0005576 ... P09386 16820678
    6 2ga4:C (1.8) BS01 1PS ? GO:0005576 ... P09386 16820678
    7 2ga4:D (1.8) BS01 1PS ? GO:0005576 ... P09386 16820678
    8 2ga4:F (1.8) BS01 1PS ? GO:0005576 ... P09386 16820678
    9 2rfq:A (1.65) BS01 1PS 1.14.14.12 GO:0003995 ... Q0S811 N/A
    10 2rfq:A (1.65) BS02 1PS 1.14.14.12 GO:0003995 ... Q0S811 N/A
    11 2rfq:B (1.65) BS01 1PS 1.14.14.12 GO:0003995 ... Q0S811 N/A
    12 2rfq:B (1.65) BS02 1PS 1.14.14.12 GO:0003995 ... Q0S811 N/A
    13 2rfq:C (1.65) BS01 1PS 1.14.14.12 GO:0003995 ... Q0S811 N/A
    14 2rfq:C (1.65) BS02 1PS 1.14.14.12 GO:0003995 ... Q0S811 N/A
    15 2rfq:C (1.65) BS03 1PS 1.14.14.12 GO:0003995 ... Q0S811 N/A
    16 2rfq:C (1.65) BS04 1PS 1.14.14.12 GO:0003995 ... Q0S811 N/A
    17 2rfq:D (1.65) BS01 1PS 1.14.14.12 GO:0003995 ... Q0S811 N/A
    18 2rfq:D (1.65) BS02 1PS 1.14.14.12 GO:0003995 ... Q0S811 N/A
    19 2rfq:D (1.65) BS03 1PS 1.14.14.12 GO:0003995 ... Q0S811 N/A
    20 3jyu:B (2.37) BS01 1PS 3.4.19.12 GO:0004843 ... P35123 N/A
    21 3ngq:A (1.8) BS01 1PS 3.1.13.4 GO:0003824 ... Q96LI5 20628353
    22 4ap9:A (1.783) BS01 1PS 3.1.3.3 GO:0000287 ... B6YX36 23239422
    23 4ap9:A (1.783) BS02 1PS 3.1.3.3 GO:0000287 ... B6YX36 23239422
    24 4ap9:B (1.783) BS01 1PS 3.1.3.3 GO:0000287 ... B6YX36 23239422
    25 4ap9:C (1.783) BS01 1PS 3.1.3.3 GO:0000287 ... B6YX36 23239422
    26 4ap9:C (1.783) BS02 1PS 3.1.3.3 GO:0000287 ... B6YX36 23239422
    27 4ap9:D (1.783) BS01 1PS 3.1.3.3 GO:0000287 ... B6YX36 23239422
    28 4m1u:B (1.56) BS01 1PS ? GO:0005576 ... Q7DJJ2 24225957
    29 4m1u:C (1.56) BS01 1PS ? GO:0005576 ... Q7DJJ2 24225957
    30 4m1u:D (1.56) BS01 1PS ? GO:0005576 ... Q7DJJ2 24225957
    31 4p7u:A (1.502) BS01 1PS 2.7.11.30 GO:0005026 ... P37173 26073093
    32 4tvb:A (1.689) BS03 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    33 4ure:B (1.4) BS01 1PS 1.1.1.311 GO:0000166 ... Q5P8S7 26488297
    34 4urf:A (1.1) BS02 1PS 1.1.1.311 GO:0000166 ... Q5P8S7 26488297
    35 4urf:A (1.1) BS03 1PS 1.1.1.311 GO:0000166 ... Q5P8S7 26488297
    36 4urf:A (1.1) BS05 1PS 1.1.1.311 GO:0000166 ... Q5P8S7 26488297
    37 4urf:B (1.1) BS02 1PS 1.1.1.311 GO:0000166 ... Q5P8S7 26488297
    38 4xqc:A (1.27) BS04 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    39 4xqc:B (1.27) BS02 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    40 4xqe:A (1.3) BS02 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    41 4xqe:A (1.3) BS05 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    42 4xqe:B (1.3) BS04 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    43 4xqg:A (1.417) BS02 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    44 4xqg:A (1.417) BS03 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    45 4xqg:B (1.417) BS02 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    46 4xqg:B (1.417) BS04 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    47 4xr4:A (1.626) BS02 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    48 4xr4:B (1.626) BS02 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    49 4xr4:B (1.626) BS03 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    50 4xr4:B (1.626) BS04 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    51 4xrg:A (1.3) BS04 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    52 4xrg:A (1.3) BS05 1PS 2.5.1.44 GO:0016740 ... O32323 26776105
    53 5ayk:A (2.25) BS01 1PS 1.8.4.- GO:0005783 ... Q9DC23 N/A
    54 5ayl:A (2.4) BS01 1PS 1.8.4.- GO:0005783 ... Q9DC23 N/A
    55 5e5u:A (2.0) BS01 1PS 3.1.3.48 GO:0004089 ... Q05909 27539848
    56 5e5u:A (2.0) BS02 1PS 3.1.3.48 GO:0004089 ... Q05909 27539848
    57 5e5u:C (2.0) BS01 1PS 3.1.3.48 GO:0004089 ... Q05909 27539848
    58 5e5u:C (2.0) BS02 1PS 3.1.3.48 GO:0004089 ... Q05909 27539848
    59 5kij:A (1.649) BS05 1PS 3.2.1.113 GO:0004571 ... Q9UKM7 27856750
    60 5kk7:A (1.7324) BS03 1PS 3.2.1.113 GO:0004571 ... Q9UKM7 27856750
    61 5kk7:A (1.7324) BS04 1PS 3.2.1.113 GO:0004571 ... Q9UKM7 27856750
    62 5kkb:A (1.774) BS04 1PS 3.2.1.113 GO:0004571 ... P45700 27856750
    63 5kkb:B (1.774) BS04 1PS 3.2.1.113 GO:0004571 ... P45700 27856750
    64 6g0c:A (2.802) BS01 1PS 2.3.2.-
    2.4.2.31
    3.4.22.-    		 GO:0106274 ... Q5ZTK4 29795347
    65 6g1b:J (2.28) BS01 1PS ? GO:0003700 ... Q8NP91 30463959
    66 6jkz:A (1.397) BS02 1PS N/A GO:0006629 ... N/A 31073025
    67 6jkz:A (1.397) BS03 1PS N/A GO:0006629 ... N/A 31073025
    68 6jl2:A (2.3) BS01 1PS N/A GO:0006629 ... N/A 31073025
    69 6jl2:A (2.3) BS02 1PS N/A GO:0006629 ... N/A 31073025
    70 6jl2:A (2.3) BS03 1PS N/A GO:0006629 ... N/A 31073025
    71 6jl2:B (2.3) BS01 1PS N/A GO:0006629 ... N/A 31073025
    72 6jl2:B (2.3) BS02 1PS N/A GO:0006629 ... N/A 31073025
    73 6jl2:C (2.3) BS01 1PS N/A GO:0006629 ... N/A 31073025
    74 6jl2:C (2.3) BS02 1PS N/A GO:0006629 ... N/A 31073025
    75 6qfs:B (2.2) BS01 1PS 3.2.1.8
    3.2.1.91    		 GO:0004553 ... P07986 N/A
    76 6qfs:D (2.2) BS01 1PS 3.2.1.8
    3.2.1.91    		 GO:0004553 ... P07986 N/A
    77 6qfs:E (2.2) BS01 1PS 3.2.1.8
    3.2.1.91    		 GO:0004553 ... P07986 N/A
    78 6qfs:F (2.2) BS01 1PS 3.2.1.8
    3.2.1.91    		 GO:0004553 ... P07986 N/A
    79 6s4d:A (1.8) BS02 1PS 2.5.1.44 GO:0016740 ... O32323 34605434
    80 6s4d:B (1.8) BS02 1PS 2.5.1.44 GO:0016740 ... O32323 34605434
    81 6s4d:B (1.8) BS03 1PS 2.5.1.44 GO:0016740 ... O32323 34605434
    82 6s6g:B (1.6) BS02 1PS 2.5.1.44 GO:0016740 ... O32323 34605434
    83 7d6q:B (1.8) BS01 1PS ? GO:0005576 ... Q7DJJ2 33972673
    84 7d6q:C (1.8) BS01 1PS ? GO:0005576 ... Q7DJJ2 33972673
    85 7d6q:D (1.8) BS01 1PS ? GO:0005576 ... Q7DJJ2 33972673
    86 7d6q:F (1.8) BS01 1PS ? GO:0005576 ... Q7DJJ2 33972673
    87 7d6r:B (1.6) BS01 1PS ? GO:0005576 ... Q7DJJ2 33972673
    88 7d6r:C (1.6) BS01 1PS ? GO:0005576 ... Q7DJJ2 33972673
    89 7d6r:D (1.6) BS02 1PS ? GO:0005576 ... Q7DJJ2 33972673
    90 7d6r:F (1.6) BS01 1PS ? GO:0005576 ... Q7DJJ2 33972673
    91 7ujj:B (6.5) BS01 1PS ? GO:0005576 ... P09386 36290479
    92 7ujj:C (6.5) BS01 1PS ? GO:0005576 ... P09386 36290479
    93 7ujj:D (6.5) BS01 1PS ? GO:0005576 ... P09386 36290479
    94 7ujj:F (6.5) BS01 1PS ? GO:0005576 ... P09386 36290479
    95 7ujj:G (6.5) BS01 1PS N/A N/A N/A 36290479
    96 7vhc:A (1.8) BS02 1PS 3.2.2.22 GO:0016787 ... Q7DI68 35794188
    97 7vhc:B (1.8) BS01 1PS ? GO:0005576 ... A7UQX3 35794188
    98 7vhc:C (1.8) BS01 1PS ? GO:0005576 ... A7UQX3 35794188
    99 7vhc:D (1.8) BS02 1PS ? GO:0005576 ... A7UQX3 35794188
    100 7vhc:F (1.8) BS01 1PS ? GO:0005576 ... A7UQX3 35794188
    101 7vhd:A (1.8) BS02 1PS 3.2.2.22 GO:0016787 ... Q7DI68 35794188
    102 7vhd:B (1.8) BS01 1PS ? GO:0005576 ... A7UQX3 35794188
    103 7vhd:C (1.8) BS01 1PS ? GO:0005576 ... A7UQX3 35794188
    104 7vhd:D (1.8) BS02 1PS ? GO:0005576 ... A7UQX3 35794188
    105 7vhd:F (1.8) BS01 1PS ? GO:0005576 ... A7UQX3 35794188
    106 7vhe:A (1.9) BS02 1PS 3.2.2.22 GO:0016787 ... Q7DI68 35794188
    107 7vhe:B (1.9) BS01 1PS ? GO:0005576 ... A7UQX3 35794188
    108 7vhe:C (1.9) BS01 1PS ? GO:0005576 ... A7UQX3 35794188
    109 7vhe:D (1.9) BS01 1PS ? GO:0005576 ... A7UQX3 35794188
    110 7vhe:F (1.9) BS01 1PS ? GO:0005576 ... A7UQX3 35794188
    111 7vhf:A (1.75) BS02 1PS 3.2.2.22 GO:0016787 ... Q7DI68 35794188
    112 7vhf:B (1.75) BS01 1PS ? GO:0005576 ... A7UQX3 35794188
    113 7vhf:C (1.75) BS01 1PS ? GO:0005576 ... A7UQX3 35794188
    114 7vhf:D (1.75) BS01 1PS ? GO:0005576 ... A7UQX3 35794188
    115 7vhf:F (1.75) BS01 1PS ? GO:0005576 ... A7UQX3 35794188
    116 8h09:A (1.81) BS01 1PS ? GO:0006629 ... A0A7Y4B3E8 37558668
    117 8h09:A (1.81) BS02 1PS ? GO:0006629 ... A0A7Y4B3E8 37558668
    118 8h09:B (1.81) BS01 1PS ? GO:0006629 ... A0A7Y4B3E8 37558668
    119 8h09:B (1.81) BS02 1PS ? GO:0006629 ... A0A7Y4B3E8 37558668
    120 8h0c:A (1.98) BS02 1PS ? GO:0006629 ... A0A7Y4B3E8 37558668
    121 8h0c:B (1.98) BS01 1PS ? GO:0006629 ... A0A7Y4B3E8 37558668
    122 8h0d:B (2.01) BS01 1PS ? GO:0006629 ... A0A7Y4B3E8 37558668
    123 8h0d:B (2.01) BS02 1PS ? GO:0006629 ... A0A7Y4B3E8 37558668
    124 8w5z:A (1.55) BS03 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    125 8w5z:A (1.55) BS04 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    126 8w5z:A (1.55) BS05 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    127 8w5z:A (1.55) BS06 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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