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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2zvq:X (1.3) BS02 1NP 2.8.2.- GO:0000103 ... Q3UZZ6 19073143
    2 2zvq:X (1.3) BS03 1NP 2.8.2.- GO:0000103 ... Q3UZZ6 19073143
    3 4b33:A (1.499) BS01 1NP ? GO:0003677 ... O74036 23344974 MOAD: Kd=0.43mM
    PDBbind: -logKd/Ki=3.37, Kd=0.43mM
    BindingDB: Kd=430000nM
    4 6ekx:A (1.13) BS03 1NP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    5 6ekx:A (1.13) BS04 1NP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    6 6eky:A (1.23) BS03 1NP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    7 6eky:A (1.23) BS04 1NP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    8 6eky:A (1.23) BS05 1NP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    9 6eky:A (1.23) BS06 1NP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    10 7nny:A (1.57) BS01 1NP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    11 7nny:A (1.57) BS02 1NP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    12 7nny:B (1.57) BS01 1NP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    13 7nny:B (1.57) BS02 1NP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    14 7nny:B (1.57) BS03 1NP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    15 7nny:C (1.57) BS01 1NP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    16 7nny:C (1.57) BS02 1NP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    17 7nny:D (1.57) BS01 1NP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    18 7nny:D (1.57) BS02 1NP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    19 7nny:E (1.57) BS01 1NP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    20 7nny:E (1.57) BS02 1NP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    21 7nny:E (1.57) BS03 1NP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    22 7nny:F (1.57) BS01 1NP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    23 7nny:F (1.57) BS02 1NP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    24 7nny:F (1.57) BS03 1NP 2.1.3.3 GO:0004585 ... P9WIT9 N/A
    25 7zy5:A (1.82) BS01 1NP 2.7.11.1 GO:0004672 ... P68400 36426237
    26 7zy5:B (1.82) BS01 1NP 2.7.11.1 GO:0004672 ... P68400 36426237
    27 7zy5:B (1.82) BS02 1NP 2.7.11.1 GO:0004672 ... P68400 36426237
    28 8qbh:A (2.05) BS01 1NP ? N/A Q7MZT8 38491909
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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