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BioLiP
Download all results in tab-seperated text for 55 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4i42:A (1.848) BS01 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    2 4i42:A (1.848) BS02 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    3 4i42:B (1.848) BS01 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    4 4i42:C (1.848) BS01 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    5 4i42:C (1.848) BS02 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    6 4i42:D (1.848) BS01 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    7 4i42:E (1.848) BS01 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    8 4i42:E (1.848) BS02 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    9 4i42:F (1.848) BS01 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    10 4i42:F (1.848) BS02 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    11 4i42:G (1.848) BS01 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    12 4i42:G (1.848) BS02 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    13 4i42:H (1.848) BS01 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    14 4i42:H (1.848) BS02 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    15 4i42:I (1.848) BS01 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    16 4i42:I (1.848) BS03 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    17 4i42:J (1.848) BS01 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    18 4i42:J (1.848) BS02 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    19 4i42:K (1.848) BS01 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    20 4i42:K (1.848) BS02 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    21 4i42:L (1.848) BS01 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    22 4i42:L (1.848) BS02 1HA 4.1.3.36 GO:0003824 ... P0ABU0 23658663
    23 4i52:A (2.35) BS01 1HA 4.1.3.36 GO:0003824 ... P73495 23658663
    24 4i52:B (2.35) BS01 1HA 4.1.3.36 GO:0003824 ... P73495 23658663
    25 4i52:C (2.35) BS01 1HA 4.1.3.36 GO:0003824 ... P73495 23658663
    26 4i52:D (2.35) BS01 1HA 4.1.3.36 GO:0003824 ... P73495 23658663
    27 4i52:E (2.35) BS01 1HA 4.1.3.36 GO:0003824 ... P73495 23658663
    28 4i52:F (2.35) BS01 1HA 4.1.3.36 GO:0003824 ... P73495 23658663
    29 4i52:G (2.35) BS01 1HA 4.1.3.36 GO:0003824 ... P73495 23658663
    30 4i52:H (2.35) BS01 1HA 4.1.3.36 GO:0003824 ... P73495 23658663
    31 4i52:I (2.35) BS01 1HA 4.1.3.36 GO:0003824 ... P73495 23658663
    32 4qij:A (2.2) BS01 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    PDBbind: -logKd/Ki=5.54, Kd=2.9uM
    33 4qij:A (2.2) BS02 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    PDBbind: -logKd/Ki=5.54, Kd=2.9uM
    34 4qij:B (2.2) BS01 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    35 4qij:B (2.2) BS02 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    36 4qij:C (2.2) BS01 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    37 4qij:C (2.2) BS02 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    38 4qij:D (2.2) BS01 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    39 4qij:D (2.2) BS02 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    40 4qij:E (2.2) BS01 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    41 4qij:E (2.2) BS02 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    42 4qij:F (2.2) BS01 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    PDBbind: -logKd/Ki=5.54, Kd=2.9uM
    43 4qij:F (2.2) BS02 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    PDBbind: -logKd/Ki=5.54, Kd=2.9uM
    44 4qij:G (2.2) BS01 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    45 4qij:G (2.2) BS02 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    46 4qij:H (2.2) BS01 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    47 4qij:H (2.2) BS02 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    48 4qij:I (2.2) BS01 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    49 4qij:I (2.2) BS02 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    50 4qij:J (2.2) BS01 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    51 4qij:J (2.2) BS02 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    52 4qij:K (2.2) BS01 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    53 4qij:K (2.2) BS02 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    54 4qij:L (2.2) BS01 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    55 4qij:L (2.2) BS02 1HA 4.1.3.36 GO:0005886 ... P9WNP5 25372686 MOAD: Kd=2.9uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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