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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ir1:A (2.38) BS04 1FZ 2.7.7.7 GO:0000287 ... Q47155 23525461
    2 4ir1:F (2.38) BS03 1FZ 2.7.7.7 GO:0000287 ... Q47155 23525461
    3 4mff:A (2.55) BS05 1FZ 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24694247
    4 4nxz:A (2.557) BS06 1FZ 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24694247
    5 4o5e:A (2.532) BS04 1FZ 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24966350
    6 4p2h:A (1.987) BS06 1FZ 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 24966350
    7 4pgq:A (2.3) BS06 1FZ 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25200079
    8 4pgx:A (2.077) BS06 1FZ 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 25200079
    9 4q44:A (2.71) BS04 1FZ 2.7.7.7 GO:0000287 ... Q47155 25497730
    10 4q44:F (2.71) BS03 1FZ 2.7.7.7 GO:0000287 ... Q47155 25497730
    11 4q45:A (2.176) BS04 1FZ 2.7.7.7 GO:0000287 ... Q47155 25497730
    12 4q45:F (2.176) BS03 1FZ 2.7.7.7 GO:0000287 ... Q47155 25497730
    13 4r8u:A (2.3) BS04 1FZ 2.7.7.7 GO:0000287 ... Q47155 25506719
    14 4r8u:B (2.3) BS03 1FZ 2.7.7.7 GO:0000287 ... Q47155 25506719
    15 4yn4:A (2.243) BS06 1FZ 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 29957995
    16 4z6d:A (2.51) BS05 1FZ 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 29301983
    17 4z6e:A (2.752) BS06 1FZ 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 29301983
    18 4z6f:A (2.444) BS06 1FZ 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 29301983
    19 5dga:A (2.3) BS03 1FZ 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    20 5dgb:A (1.79) BS05 1FZ 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    21 5l1j:A (1.94) BS05 1FZ 2.7.7.7 GO:0003684 ... Q9Y253 27694439
    22 6e3v:A (1.96) BS06 1FZ 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 30817143
    23 6m7o:A (3.0) BS05 1FZ 2.7.7.7 GO:0003684 ... Q9Y253 30275308
    24 6m7u:A (3.4) BS03 1FZ 2.7.7.7 GO:0003684 ... Q9Y253 30275308
    25 6pl7:A (2.5) BS03 1FZ 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    26 6pl8:A (2.17) BS03 1FZ 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    27 6txe:A (3.19) BS02 1FZ 3.1.5.- N/A Q9Y3Z3 32576829
    28 6txe:B (3.19) BS03 1FZ 3.1.5.- N/A Q9Y3Z3 32576829
    29 6txe:C (3.19) BS05 1FZ 3.1.5.- N/A Q9Y3Z3 32576829
    30 6txe:D (3.19) BS06 1FZ 3.1.5.- N/A Q9Y3Z3 32576829
    31 6txe:E (3.19) BS02 1FZ 3.1.5.- N/A Q9Y3Z3 32576829
    32 6txe:F (3.19) BS03 1FZ 3.1.5.- N/A Q9Y3Z3 32576829
    33 6txe:G (3.19) BS05 1FZ 3.1.5.- N/A Q9Y3Z3 32576829
    34 6txe:H (3.19) BS06 1FZ 3.1.5.- N/A Q9Y3Z3 32576829
    35 6txe:I (3.19) BS02 1FZ 3.1.5.- N/A Q9Y3Z3 32576829
    36 6txe:J (3.19) BS04 1FZ 3.1.5.- N/A Q9Y3Z3 32576829
    37 6txe:K (3.19) BS05 1FZ 3.1.5.- N/A Q9Y3Z3 32576829
    38 6txe:L (3.19) BS06 1FZ 3.1.5.- N/A Q9Y3Z3 32576829
    39 6txe:M (3.19) BS02 1FZ 3.1.5.- N/A Q9Y3Z3 32576829
    40 6txe:N (3.19) BS04 1FZ 3.1.5.- N/A Q9Y3Z3 32576829
    41 6txe:O (3.19) BS04 1FZ 3.1.5.- N/A Q9Y3Z3 32576829
    42 6txe:P (3.19) BS06 1FZ 3.1.5.- N/A Q9Y3Z3 32576829
    43 6vgm:A (2.84) BS03 1FZ 2.7.7.7 GO:0000287 ... Q97W02 32686822
    44 6vgm:D (2.84) BS04 1FZ 2.7.7.7 GO:0000287 ... Q97W02 32686822
    45 7mz1:A (2.175) BS06 1FZ 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 N/A
    46 7mz4:A (2.076) BS05 1FZ 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 N/A
    47 8uk4:A (3.02) BS03 1FZ 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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