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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3u7q:A (1.0) BS02 1CL 1.18.6.1 GO:0005524 ... P07328 22096190
    2 3u7q:B (1.0) BS02 1CL 1.18.6.1 GO:0005524 ... P07329 22096190
    3 3u7q:C (1.0) BS02 1CL 1.18.6.1 GO:0005524 ... P07328 22096190
    4 3u7q:D (1.0) BS03 1CL 1.18.6.1 GO:0005524 ... P07329 22096190
    5 4nd8:A (2.0) BS02 1CL 1.18.6.1 GO:0005524 ... P07328 24392967
    6 4nd8:B (2.0) BS01 1CL 1.18.6.1 GO:0005524 ... P07329 24392967
    7 4nd8:C (2.0) BS02 1CL 1.18.6.1 GO:0005524 ... P07328 24392967
    8 4nd8:D (2.0) BS02 1CL 1.18.6.1 GO:0005524 ... P07329 24392967
    9 4xpi:A (1.97) BS02 1CL 1.18.6.1 GO:0005524 ... P07328 25831270
    10 4xpi:B (1.97) BS01 1CL 1.18.6.1 GO:0005524 ... P07329 25831270
    11 4xpi:C (1.97) BS02 1CL 1.18.6.1 GO:0005524 ... P07328 25831270
    12 4xpi:D (1.97) BS03 1CL 1.18.6.1 GO:0005524 ... P07329 25831270
    13 6bbl:A (1.68) BS03 1CL 1.18.6.1 GO:0005524 ... P07328 29275221
    14 6bbl:B (1.68) BS01 1CL 1.18.6.1 GO:0005524 ... P07329 29275221
    15 6bbl:C (1.68) BS03 1CL 1.18.6.1 GO:0005524 ... P07328 29275221
    16 6bbl:D (1.68) BS03 1CL 1.18.6.1 GO:0005524 ... P07329 29275221
    17 6ug0:A (1.83) BS05 1CL 1.18.6.1 GO:0005524 ... P07328 32554596
    18 6ug0:B (1.83) BS01 1CL 1.18.6.1 GO:0005524 ... P07329 32554596
    19 6ug0:C (1.83) BS06 1CL 1.18.6.1 GO:0005524 ... P07328 32554596
    20 6ug0:D (1.83) BS03 1CL 1.18.6.1 GO:0005524 ... P07329 32554596
    21 8bts:A (3.03) BS02 1CL 1.18.6.1 GO:0005524 ... P07328 37234119
    22 8bts:B (3.03) BS01 1CL 1.18.6.1 GO:0005524 ... P07329 37234119
    23 8bts:C (3.03) BS02 1CL 1.18.6.1 GO:0005524 ... P07328 37234119
    24 8bts:D (3.03) BS02 1CL 1.18.6.1 GO:0005524 ... P07329 37234119
    25 8bts:H (3.03) BS02 1CL 1.18.6.1 GO:0005524 ... P07328 37234119
    26 8bts:I (3.03) BS01 1CL 1.18.6.1 GO:0005524 ... P07329 37234119
    27 8bts:J (3.03) BS02 1CL 1.18.6.1 GO:0005524 ... P07328 37234119
    28 8bts:L (3.03) BS02 1CL 1.18.6.1 GO:0005524 ... P07329 37234119
    29 8dbx:A (1.92) BS03 1CL 1.18.6.1 GO:0005524 ... P07328 36841829
    30 8dbx:B (1.92) BS02 1CL 1.18.6.1 GO:0005524 ... P07329 36841829
    31 8dbx:C (1.92) BS03 1CL 1.18.6.1 GO:0005524 ... P07328 36841829
    32 8dbx:D (1.92) BS04 1CL 1.18.6.1 GO:0005524 ... P07329 36841829
    33 8p8g:A (1.55) BS02 1CL 1.18.6.1 GO:0005524 ... P07328 38034976
    34 8p8g:B (1.55) BS01 1CL 1.18.6.1 GO:0005524 ... P07329 38034976
    35 8p8g:C (1.55) BS02 1CL 1.18.6.1 GO:0005524 ... P07328 38034976
    36 8p8g:D (1.55) BS01 1CL 1.18.6.1 GO:0005524 ... P07329 38034976
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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