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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1y9r:A (1.96) BS01 1CA ? N/A P08235 15908963
    2 1y9r:B (1.96) BS01 1CA ? N/A P08235 15908963
    3 2aa7:A (2.2) BS01 1CA ? N/A P08235 15967794
    4 2abi:A (2.33) BS01 1CA ? N/A P08235 N/A
    5 2abi:B (2.33) BS01 1CA ? N/A P08235 N/A
    6 2abi:C (2.33) BS01 1CA ? N/A P08235 N/A
    7 2q3y:A (2.4) BS02 1CA N/A N/A N/A 17702911
    8 3ry9:A (1.95) BS01 1CA N/A N/A N/A 21698144
    9 3ry9:B (1.95) BS01 1CA N/A N/A N/A 21698144
    10 4dvq:A (2.49) BS02 1CA 1.14.15.4
    1.14.15.5    		 GO:0002017 ... P19099 23322723
    11 4dvq:B (2.49) BS02 1CA 1.14.15.4
    1.14.15.5    		 GO:0002017 ... P19099 23322723
    12 4dvq:C (2.49) BS02 1CA 1.14.15.4
    1.14.15.5    		 GO:0002017 ... P19099 23322723
    13 4dvq:D (2.49) BS02 1CA 1.14.15.4
    1.14.15.5    		 GO:0002017 ... P19099 23322723
    14 4dvq:E (2.49) BS02 1CA 1.14.15.4
    1.14.15.5    		 GO:0002017 ... P19099 23322723
    15 4dvq:F (2.49) BS02 1CA 1.14.15.4
    1.14.15.5    		 GO:0002017 ... P19099 23322723
    16 4dvq:G (2.49) BS02 1CA 1.14.15.4
    1.14.15.5    		 GO:0002017 ... P19099 23322723
    17 4dvq:H (2.49) BS02 1CA 1.14.15.4
    1.14.15.5    		 GO:0002017 ... P19099 23322723
    18 4dvq:I (2.49) BS02 1CA 1.14.15.4
    1.14.15.5    		 GO:0002017 ... P19099 23322723
    19 4dvq:J (2.49) BS02 1CA 1.14.15.4
    1.14.15.5    		 GO:0002017 ... P19099 23322723
    20 4dvq:K (2.49) BS02 1CA 1.14.15.4
    1.14.15.5    		 GO:0002017 ... P19099 23322723
    21 4dvq:L (2.49) BS02 1CA 1.14.15.4
    1.14.15.5    		 GO:0002017 ... P19099 23322723
    22 4fne:A (2.78) BS01 1CA N/A N/A N/A 23166518
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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