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BioLiP
Download all results in tab-seperated text for 55 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1g4h:A (1.8) BS02 1BO 3.8.1.5 GO:0003824 ... D4Z2G1 11939779
    2 1g4h:A (1.8) BS03 1BO 3.8.1.5 GO:0003824 ... D4Z2G1 11939779
    3 1ooh:A (1.25) BS01 1BO ? GO:0005549 ... O02372 12881720
    4 1ooh:B (1.25) BS01 1BO ? GO:0005549 ... O02372 12881720
    5 1yky:X (1.9) BS01 1BO 3.2.1.17 GO:0003796 ... P00698 15983424
    6 1yky:X (1.9) BS02 1BO 3.2.1.17 GO:0003796 ... P00698 15983424
    7 2huf:A (1.75) BS01 1BO 2.6.1.44 GO:0004760 ... Q3LSM4 16990263
    8 2huf:A (1.75) BS02 1BO 2.6.1.44 GO:0004760 ... Q3LSM4 16990263
    9 2huf:B (1.75) BS01 1BO 2.6.1.44 GO:0004760 ... Q3LSM4 16990263
    10 2huf:B (1.75) BS02 1BO 2.6.1.44 GO:0004760 ... Q3LSM4 16990263
    11 2huu:A (2.1) BS02 1BO 2.6.1.44 GO:0004760 ... Q3LSM4 16990263
    12 2vdg:A (1.92) BS02 1BO 1.1.1.21 GO:0004032 ... P23901 18300247
    13 2vdg:A (1.92) BS03 1BO 1.1.1.21 GO:0004032 ... P23901 18300247
    14 3b6x:A (2.0) BS01 1BO ? GO:0005549 ... O02372 18234222
    15 3b6x:B (2.0) BS01 1BO ? GO:0005549 ... O02372 18234222
    16 3et2:A (2.24) BS02 1BO ? GO:0003677 ... Q03181 19116277
    17 3s3e:A (2.4) BS01 1BO 3.1.3.48 GO:0004725 ... P35992 22007620
    18 3s3e:B (2.4) BS01 1BO 3.1.3.48 GO:0004725 ... P35992 22007620
    19 3s3f:B (2.7) BS01 1BO 3.1.3.48 GO:0004725 ... P35992 22007620
    20 3s3h:A (2.8) BS01 1BO 3.1.3.48 GO:0004725 ... P35992 22007620
    21 5el1:A (1.25) BS01 1BO 4.1.2.4 GO:0003824 ... P0A6L0 30155096
    22 5emu:A (1.5) BS01 1BO 4.1.2.4 GO:0003824 ... P0A6L0 30155096
    23 5z3s:A (1.65) BS01 1BO ? GO:0005576 ... Q7YS85 29524427
    24 7nrj:AAA (1.67) BS01 1BO 3.5.2.6 GO:0008658 ... A0A482LRD5 N/A
    25 7nrj:BBB (1.67) BS01 1BO 3.5.2.6 GO:0008658 ... A0A482LRD5 N/A
    26 7nrj:CCC (1.67) BS01 1BO 3.5.2.6 GO:0008658 ... A0A482LRD5 N/A
    27 7nrj:DDD (1.67) BS01 1BO 3.5.2.6 GO:0008658 ... A0A482LRD5 N/A
    28 7o1z:A (1.8) BS02 1BO 1.11.2.1 GO:0004601 ... A0A1Y2TH07 34540338
    29 7o5n:AAA (1.6) BS01 1BO 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    30 7o5n:AAA (1.6) BS02 1BO 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    31 7o5n:BBB (1.6) BS01 1BO 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    32 7o5n:CCC (1.6) BS01 1BO 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    33 7o5q:BBB (1.85) BS01 1BO 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    34 7o5q:DDD (1.85) BS02 1BO 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    35 7peh:AAA (1.92) BS01 1BO 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    36 7peh:AAA (1.92) BS02 1BO 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    37 7peh:CCC (1.92) BS01 1BO 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    38 7peh:DDD (1.92) BS01 1BO 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    39 7pep:CCC (1.7) BS01 1BO 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    40 7pep:CCC (1.7) BS02 1BO 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    41 7pfn:AAA (1.8) BS02 1BO 3.5.2.6 GO:0008658 ... A0A482LRD5 N/A
    42 7pfn:AAA (1.8) BS03 1BO 3.5.2.6 GO:0008658 ... A0A482LRD5 N/A
    43 7pfn:BBB (1.8) BS02 1BO 3.5.2.6 GO:0008658 ... A0A482LRD5 N/A
    44 7pgo:AAA (1.85) BS01 1BO 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    45 7pse:BBB (2.32) BS02 1BO 3.5.2.6 GO:0008658 ... A0A482LRD5 N/A
    46 7psf:CCC (2.1) BS01 1BO 3.5.2.6 GO:0008658 ... Q6XEC0 N/A
    47 7q14:AAA (2.15) BS02 1BO 3.5.2.6 GO:0008658 ... A0A482LRD5 N/A
    48 7q14:BBB (2.15) BS02 1BO 3.5.2.6 GO:0008658 ... A0A482LRD5 N/A
    49 7q14:CCC (2.15) BS01 1BO 3.5.2.6 GO:0008658 ... A0A482LRD5 N/A
    50 7q14:CCC (2.15) BS03 1BO 3.5.2.6 GO:0008658 ... A0A482LRD5 N/A
    51 7q14:EEE (2.15) BS02 1BO 3.5.2.6 GO:0008658 ... A0A482LRD5 N/A
    52 7q14:GGG (2.15) BS02 1BO 3.5.2.6 GO:0008658 ... A0A482LRD5 N/A
    53 8bxw:AAA (1.3) BS01 1BO ? GO:0005549 ... Q8T6R6 36921814
    54 8hgw:A (2.80001) BS01 1BO ? GO:0003824 ... Q2MHH5 36859434
    55 8qnz:BBB (1.53) BS02 1BO 3.5.2.6 GO:0008658 ... Q6XEC0 38161376
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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