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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4hy0:A (2.84) BS03 1AQ 2.3.2.27 N/A P98170 23298277 PDBbind: -logKd/Ki=6.70, IC50=200nM
    BindingDB: IC50=200nM
    2 4hy0:A (2.84) BS04 1AQ 2.3.2.27 N/A P98170 23298277 PDBbind: -logKd/Ki=6.70, IC50=200nM
    BindingDB: IC50=200nM
    3 4hy0:B (2.84) BS02 1AQ 2.3.2.27 N/A P98170 23298277 PDBbind: -logKd/Ki=6.70, IC50=200nM
    BindingDB: IC50=200nM
    4 4hy0:B (2.84) BS03 1AQ 2.3.2.27 N/A P98170 23298277 PDBbind: -logKd/Ki=6.70, IC50=200nM
    BindingDB: IC50=200nM
    5 4hy0:C (2.84) BS02 1AQ 2.3.2.27 N/A P98170 23298277 BindingDB: IC50=200nM
    6 4hy0:C (2.84) BS03 1AQ 2.3.2.27 N/A P98170 23298277 BindingDB: IC50=200nM
    7 4hy0:C (2.84) BS04 1AQ 2.3.2.27 N/A P98170 23298277 BindingDB: IC50=200nM
    8 4hy0:D (2.84) BS01 1AQ 2.3.2.27 N/A P98170 23298277 BindingDB: IC50=200nM
    9 4hy0:D (2.84) BS04 1AQ 2.3.2.27 N/A P98170 23298277 BindingDB: IC50=200nM
    10 4hy0:E (2.84) BS03 1AQ 2.3.2.27 N/A P98170 23298277 BindingDB: IC50=200nM
    11 4hy0:F (2.84) BS02 1AQ 2.3.2.27 N/A P98170 23298277 BindingDB: IC50=200nM
    12 4hy0:G (2.84) BS01 1AQ 2.3.2.27 N/A P98170 23298277 BindingDB: IC50=200nM
    13 4hy0:G (2.84) BS03 1AQ 2.3.2.27 N/A P98170 23298277 BindingDB: IC50=200nM
    14 4hy0:H (2.84) BS02 1AQ 2.3.2.27 N/A P98170 23298277 BindingDB: IC50=200nM
    15 4hy5:A (1.752) BS02 1AQ 2.3.2.27 N/A Q13490 23298277 MOAD: ic50=1.3nM
    PDBbind: -logKd/Ki=8.89, IC50=1.3nM
    16 4hy5:B (1.752) BS02 1AQ 2.3.2.27 N/A Q13490 23298277 MOAD: ic50=1.3nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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