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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1j0e:A (2.45) BS02 1AC 3.5.99.7 GO:0008660 ... Q7M523 12882962
    2 1j0e:B (2.45) BS02 1AC 3.5.99.7 GO:0008660 ... Q7M523 12882962
    3 1j0e:C (2.45) BS02 1AC 3.5.99.7 GO:0008660 ... Q7M523 12882962
    4 1j0e:D (2.45) BS02 1AC 3.5.99.7 GO:0008660 ... Q7M523 12882962
    5 1tz2:A (2.1) BS02 1AC 3.5.99.7 GO:0008660 ... Q00740 15491139
    6 1tz2:B (2.1) BS02 1AC 3.5.99.7 GO:0008660 ... Q00740 15491139
    7 1tz2:C (2.1) BS02 1AC 3.5.99.7 GO:0008660 ... Q00740 15491139
    8 1tz2:D (2.1) BS02 1AC 3.5.99.7 GO:0008660 ... Q00740 15491139
    9 1y20:A (1.4) BS01 1AC ? GO:0015276 ... P35439 15996549 MOAD: Ki=4.8uM
    PDBbind: -logKd/Ki=5.32, Ki=4.8uM
    10 2rc9:A (1.96) BS01 1AC ? GO:0015276 ... Q9R1M7 18636091 PDBbind: -logKd/Ki=7.40, IC50=0.04uM
    11 2rc9:B (1.96) BS01 1AC ? GO:0015276 ... Q9R1M7 18636091
    12 4tll:A (3.59) BS01 1AC ? GO:0004972 ... A0A1L8F5J9 25008524
    13 4tlm:A (3.77) BS01 1AC ? GO:0004972 ... A0A1L8F5J9 25008524
    14 5tcv:A (2.6) BS01 1AC 1.14.17.4 GO:0002238 ... Q08506 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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