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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1z95:A (1.8) BS01 198 ? N/A P10275 15833816 MOAD: Ki=76nM
    PDBbind: -logKd/Ki=7.12, Ki=76nM
    BindingDB: IC50=248nM, Ki=509nM
    2 4fia:A (2.1) BS03 198 1.14.14.25 GO:0004497 ... Q9Y6A2 23288837 MOAD: Kd=1.8uM
    3 4la0:A (2.4) BS01 198 ? GO:0003677 ... P02768 23838380
    4 4la0:B (2.4) BS01 198 ? GO:0003677 ... P02768 23838380
    5 4ojb:A (2.0) BS01 198 ? N/A P10275 25091737 BindingDB: IC50=248nM, Ki=509nM
    6 4ok1:A (2.09) BS02 198 ? N/A P10275 25091737 BindingDB: IC50=248nM, Ki=509nM
    7 4okb:A (2.95) BS02 198 ? N/A P10275 25091737 BindingDB: IC50=248nM, Ki=509nM
    8 4okt:A (2.5) BS02 198 ? N/A P10275 25091737 BindingDB: IC50=248nM, Ki=509nM
    9 4okw:A (2.0) BS02 198 ? N/A P10275 25091737 BindingDB: IC50=248nM, Ki=509nM
    10 4okx:A (2.1) BS02 198 ? N/A P10275 25091737 BindingDB: IC50=248nM, Ki=509nM
    11 4olm:A (2.8) BS02 198 ? N/A P10275 25091737 BindingDB: IC50=248nM, Ki=509nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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