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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2msc:B (-1.00) BS01 17F 3.6.5.2 GO:0000139 ... P01116 25941399
    2 2msc:B (-1.00) BS02 17F 3.6.5.2 GO:0000139 ... P01116 25941399
    3 2msc:B (-1.00) BS03 17F 3.6.5.2 GO:0000139 ... P01116 25941399
    4 2msd:B (-1.00) BS01 17F 3.6.5.2 GO:0000139 ... P01116 25941399
    5 2msd:B (-1.00) BS02 17F 3.6.5.2 GO:0000139 ... P01116 25941399
    6 2mse:D (-1.00) BS01 17F 2.7.11.1 GO:0007165 ... P10398 25941399
    7 2mse:D (-1.00) BS02 17F 2.7.11.1 GO:0007165 ... P10398 25941399
    8 2mse:D (-1.00) BS03 17F 2.7.11.1 GO:0007165 ... P10398 25941399
    9 4hyt:A (3.404) BS06 17F 7.2.2.13 GO:0000166 ... P05024 23776223
    10 4hyt:A (3.404) BS07 17F 7.2.2.13 GO:0000166 ... P05024 23776223
    11 4hyt:B (3.404) BS01 17F ? GO:0001671 ... P05027 23776223
    12 4hyt:D (3.404) BS02 17F ? GO:0001671 ... P05027 23776223
    13 4ret:A (4.0) BS08 17F 7.2.2.13 GO:0000166 ... P05024 25624492
    14 4ret:A (4.0) BS09 17F 7.2.2.13 GO:0000166 ... P05024 25624492
    15 4ret:B (4.0) BS01 17F ? GO:0001671 ... P05027 25624492
    16 6cc9:B (-1.00) BS01 17F 3.6.5.2 GO:0000139 ... P01116 30122370
    17 6cc9:B (-1.00) BS02 17F 3.6.5.2 GO:0000139 ... P01116 30122370
    18 6cch:A (-1.00) BS01 17F ? GO:0005576 ... P02647 30122370
    19 6ccx:B (-1.00) BS01 17F 3.6.5.2 GO:0000139 ... P01116 30122370
    20 6ccx:B (-1.00) BS02 17F 3.6.5.2 GO:0000139 ... P01116 30122370
    21 6pts:B (-1.00) BS01 17F 3.6.5.2 GO:0000139 ... P01116 32414921
    22 6w4e:B (-1.00) BS03 17F 3.6.5.2 GO:0000139 ... P01116 32227412
    23 6w4e:C (-1.00) BS01 17F 3.6.5.2 GO:0000139 ... P01116 32227412
    24 6w4e:C (-1.00) BS04 17F 3.6.5.2 GO:0000139 ... P01116 32227412
    25 6w4e:D (-1.00) BS01 17F ? GO:0005576 ... P02647 32227412
    26 6w4f:B (-1.00) BS01 17F 3.6.5.2 GO:0000139 ... P01116 32227412
    27 6w4f:C (-1.00) BS03 17F 3.6.5.2 GO:0000139 ... P01116 32227412
    28 7rsc:A (-1.00) BS03 17F 3.6.5.2 GO:0000139 ... P01116 34703570
    29 7rsc:A (-1.00) BS04 17F 3.6.5.2 GO:0000139 ... P01116 34703570
    30 7rsc:D (-1.00) BS05 17F ? GO:0005576 ... P02647 34703570
    31 7rsc:D (-1.00) BS06 17F ? GO:0005576 ... P02647 34703570
    32 7rse:B (-1.00) BS02 17F 3.6.5.2 GO:0000139 ... P01116 34703570
    33 7rse:B (-1.00) BS03 17F 3.6.5.2 GO:0000139 ... P01116 34703570
    34 7rse:D (-1.00) BS01 17F ? GO:0005576 ... P02647 34703570
    35 7rse:D (-1.00) BS05 17F ? GO:0005576 ... P02647 34703570
    36 7rse:E (-1.00) BS05 17F ? GO:0005576 ... P02647 34703570
    37 7rse:E (-1.00) BS06 17F ? GO:0005576 ... P02647 34703570
    38 7vsg:A (3.9) BS01 17F 7.6.2.1 GO:0000166 ... Q8NB49 34922944
    39 7vsh:A (3.4) BS02 17F 7.6.2.1 GO:0000166 ... Q8NB49 34922944
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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