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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1sze:A (3.0) BS02 173 1.1.2.3 GO:0016491 ... P00175 15260495
    2 1sze:B (3.0) BS02 173 1.1.2.3 GO:0016491 ... P00175 15260495
    3 3sg0:A (1.201) BS01 173 ? N/A Q2IR47 23606130
    4 4mnc:A (1.05) BS01 173 ? GO:0055085 ... Q122C7 25540822
    5 4mnc:A (1.05) BS02 173 ? GO:0055085 ... Q122C7 25540822
    6 4mni:A (1.9) BS01 173 ? GO:0055085 ... Q122C7 25540822
    7 5zzz:A (1.446) BS02 173 1.1.3.46 GO:0004459 ... O52792 31588923
    8 6a08:A (1.547) BS03 173 1.1.3.46 GO:0004459 ... O52792 31588923
    9 6a08:A (1.547) BS04 173 1.1.3.46 GO:0004459 ... O52792 31588923
    10 6a19:A (1.55) BS02 173 1.1.3.46 GO:0004459 ... O52792 31588923
    11 6a19:A (1.55) BS03 173 1.1.3.46 GO:0004459 ... O52792 31588923
    12 6a1m:A (1.55) BS03 173 1.1.3.46 GO:0004459 ... O52792 31588923
    13 6a23:A (1.65) BS03 173 1.1.3.46 GO:0004459 ... O52792 31588923
    14 7qnu:A (1.64) BS05 173 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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