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BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1jz5:A (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    2 1jz5:B (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    3 1jz5:C (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    4 1jz5:D (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    5 3czj:A (2.05) BS01 149 3.2.1.23 GO:0000287 ... P00722 19229596
    6 3czj:B (2.05) BS01 149 3.2.1.23 GO:0000287 ... P00722 19229596
    7 3czj:C (2.05) BS01 149 3.2.1.23 GO:0000287 ... P00722 19229596
    8 3czj:D (2.05) BS01 149 3.2.1.23 GO:0000287 ... P00722 19229596
    9 3i3b:A (2.2) BS01 149 3.2.1.23 GO:0000287 ... P00722 20921997 MOAD: Ki=5.9mM
    PDBbind: -logKd/Ki=2.23, Ki=5.9mM
    10 3i3b:B (2.2) BS01 149 3.2.1.23 GO:0000287 ... P00722 20921997 MOAD: Ki=5.9mM
    11 3i3b:C (2.2) BS01 149 3.2.1.23 GO:0000287 ... P00722 20921997 MOAD: Ki=5.9mM
    12 3i3b:D (2.2) BS01 149 3.2.1.23 GO:0000287 ... P00722 20921997 MOAD: Ki=5.9mM
    PDBbind: -logKd/Ki=2.23, Ki=5.9mM
    13 3mv0:1 (2.2) BS01 149 3.2.1.23 GO:0000287 ... P00722 N/A PDBbind: -logKd/Ki=3.85, Ki=0.14mM
    14 3mv0:2 (2.2) BS01 149 3.2.1.23 GO:0000287 ... P00722 N/A
    15 3mv0:3 (2.2) BS01 149 3.2.1.23 GO:0000287 ... P00722 N/A
    16 3mv0:4 (2.2) BS01 149 3.2.1.23 GO:0000287 ... P00722 N/A PDBbind: -logKd/Ki=3.85, Ki=0.14mM
    17 3t09:A (1.75) BS01 149 3.2.1.23 GO:0000287 ... P00722 22155115 MOAD: Ki=0.16mM
    PDBbind: -logKd/Ki=3.80, Ki=0.16mM
    18 3t09:B (1.75) BS01 149 3.2.1.23 GO:0000287 ... P00722 22155115 MOAD: Ki=0.16mM
    19 3t09:C (1.75) BS01 149 3.2.1.23 GO:0000287 ... P00722 22155115 MOAD: Ki=0.16mM
    20 3t09:D (1.75) BS01 149 3.2.1.23 GO:0000287 ... P00722 22155115 MOAD: Ki=0.16mM
    PDBbind: -logKd/Ki=3.80, Ki=0.16mM
    21 3t0d:A (1.93) BS01 149 3.2.1.23 GO:0000287 ... P00722 22155115 MOAD: Ki=4.3mM
    PDBbind: -logKd/Ki=2.37, Ki=4.3mM
    22 3t0d:B (1.93) BS01 149 3.2.1.23 GO:0000287 ... P00722 22155115 MOAD: Ki=4.3mM
    23 3t0d:C (1.93) BS01 149 3.2.1.23 GO:0000287 ... P00722 22155115 MOAD: Ki=4.3mM
    24 3t0d:D (1.93) BS01 149 3.2.1.23 GO:0000287 ... P00722 22155115 MOAD: Ki=4.3mM
    PDBbind: -logKd/Ki=2.37, Ki=4.3mM
    25 3t2q:A (2.4) BS01 149 3.2.1.23 GO:0000287 ... P00722 22155115 MOAD: Ki=0.22mM
    PDBbind: -logKd/Ki=3.66, Ki=0.22mM
    26 3t2q:B (2.4) BS01 149 3.2.1.23 GO:0000287 ... P00722 22155115 MOAD: Ki=0.22mM
    27 3t2q:C (2.4) BS01 149 3.2.1.23 GO:0000287 ... P00722 22155115 MOAD: Ki=0.22mM
    28 3t2q:D (2.4) BS01 149 3.2.1.23 GO:0000287 ... P00722 22155115 MOAD: Ki=0.22mM
    PDBbind: -logKd/Ki=3.66, Ki=0.22mM
    29 3vdb:A (2.05) BS01 149 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=3.03mM
    PDBbind: -logKd/Ki=2.52, Ki=3.03mM
    30 3vdb:B (2.05) BS01 149 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=3.03mM
    31 3vdb:C (2.05) BS01 149 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=3.03mM
    32 3vdb:D (2.05) BS01 149 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=3.03mM
    PDBbind: -logKd/Ki=2.52, Ki=3.03mM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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