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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1jpz:A (1.65) BS02 140 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 11695892 MOAD: Kd=262nM
    BindingDB: Kd=82nM
    2 1jpz:B (1.65) BS02 140 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 11695892 MOAD: Kd=262nM
    BindingDB: Kd=82nM
    3 1zoa:A (1.74) BS02 140 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 21875028 MOAD: Kd=45nM
    BindingDB: Kd=82nM
    4 1zoa:B (1.74) BS02 140 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 21875028 MOAD: Kd=45nM
    BindingDB: Kd=82nM
    5 3cbd:A (2.65) BS02 140 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A BindingDB: Kd=82nM
    6 3cbd:B (2.65) BS02 140 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A BindingDB: Kd=82nM
    7 3kx3:A (1.803) BS02 140 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 20180779 BindingDB: Kd=82nM
    8 3kx3:B (1.803) BS02 140 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 20180779 BindingDB: Kd=82nM
    9 4kpa:A (2.0) BS02 140 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 23829560 MOAD: Kd=0.37uM
    BindingDB: Kd=82nM
    10 5dyz:C (1.967) BS02 140 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 26718083 MOAD: Kd=0.54uM
    BindingDB: Kd=82nM
    11 5jq2:A (2.0) BS02 140 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 27639964 BindingDB: Kd=82nM
    12 5jq2:B (2.0) BS02 140 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 27639964 BindingDB: Kd=82nM
    13 8hqm:R (2.95) BS01 140 ? GO:0000082 ... P0ABE7
    Q9UNW8    		 37770763
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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