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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1jcm:P (2.1) BS02 137 4.1.1.48
    5.3.1.24    		 GO:0004425 ... P00909 11856350
    2 1lbf:A (2.05) BS01 137 4.1.1.48 GO:0000162 ... Q06121 12054868 MOAD: Kd=0.014uM
    PDBbind: -logKd/Ki=7.85, Kd=0.014uM
    3 1lbl:A (2.4) BS01 137 4.1.1.48 GO:0000162 ... Q06121 12054868 MOAD: Kd=0.014uM
    4 1lbm:A (2.8) BS01 137 5.3.1.24 GO:0000162 ... Q56320 12356303
    5 2y85:A (2.4) BS01 137 5.3.1.16
    5.3.1.24    		 GO:0000105 ... P9WMM5 21321225
    6 2y85:B (2.4) BS01 137 5.3.1.16
    5.3.1.24    		 GO:0000105 ... P9WMM5 21321225
    7 2y85:C (2.4) BS01 137 5.3.1.16
    5.3.1.24    		 GO:0000105 ... P9WMM5 21321225
    8 2y85:D (2.4) BS01 137 5.3.1.16
    5.3.1.24    		 GO:0000105 ... P9WMM5 21321225
    9 6y88:A (2.09983) BS01 137 4.1.1.48 GO:0000162 ... P20577 32928960
    10 6y88:B (2.09983) BS01 137 4.1.1.48 GO:0000162 ... P20577 32928960
    11 6y88:C (2.09983) BS01 137 4.1.1.48 GO:0000162 ... P20577 32928960
    12 6y88:D (2.09983) BS01 137 4.1.1.48 GO:0000162 ... P20577 32928960
    13 6y88:E (2.09983) BS01 137 4.1.1.48 GO:0000162 ... P20577 32928960
    14 6y88:F (2.09983) BS01 137 4.1.1.48 GO:0000162 ... P20577 32928960
    15 6y88:H (2.09983) BS01 137 4.1.1.48 GO:0000162 ... P20577 32928960
    16 7ety:A (2.21) BS01 137 4.1.1.48
    5.3.1.24    		 GO:0000162 ... P06560 34657425
    17 7ety:A (2.21) BS02 137 4.1.1.48
    5.3.1.24    		 GO:0000162 ... P06560 34657425
    18 7ety:B (2.21) BS02 137 4.1.1.48
    5.3.1.24    		 GO:0000162 ... P06560 34657425
    19 7ety:B (2.21) BS03 137 4.1.1.48
    5.3.1.24    		 GO:0000162 ... P06560 34657425
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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