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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1i5d:A (2.9) BS01 128 2.7.13.3 GO:0016310 ... Q56310 11276258 PDBbind: -logKd/Ki=8.00, Kd<0.010uM
    2 2gvd:A (2.9) BS04 128 4.6.1.1 GO:0009190 ... P30803 16766715 PDBbind: -logKd/Ki=7.00, Ki=100nM
    3 2gvd:B (2.9) BS02 128 4.6.1.1 GO:0009190 ... P26769 16766715 PDBbind: -logKd/Ki=7.00, Ki=100nM
    4 2pmk:A (1.6) BS01 128 ? GO:0005524 ... P08716 18155559 PDBbind: -logKd/Ki=5.92, Kd=1.2uM
    5 3ar7:A (2.15) BS02 128 7.2.2.10 GO:0000166 ... P04191 21239683
    6 5a3s:A (3.3) BS02 128 7.2.2.10 GO:0000166 ... P04191 27050689 PDBbind: -logKd/Ki=8.68, Kd=2.1nM
    7 5a3s:B (3.3) BS02 128 7.2.2.10 GO:0000166 ... P04191 27050689
    8 5ncq:A (3.0) BS01 128 7.2.2.10 GO:0000166 ... P04191 29293507
    9 5svq:A (3.25) BS01 128 ? GO:0001614 ... P56373 27626375
    10 5xw6:A (3.1) BS01 128 N/A GO:0001614 ... N/A 29026074
    11 5xw6:A (3.1) BS02 128 N/A GO:0001614 ... N/A 29026074
    12 5xw6:B (3.1) BS01 128 N/A GO:0001614 ... N/A 29026074 PDBbind: -logKd/Ki=4.91, Kd=12.26uM
    13 5xw6:B (3.1) BS02 128 N/A GO:0001614 ... N/A 29026074 PDBbind: -logKd/Ki=4.91, Kd=12.26uM
    14 5xw6:C (3.1) BS01 128 N/A GO:0001614 ... N/A 29026074 PDBbind: -logKd/Ki=4.91, Kd=12.26uM
    15 5xw6:C (3.1) BS02 128 N/A GO:0001614 ... N/A 29026074 PDBbind: -logKd/Ki=4.91, Kd=12.26uM
    16 6yaa:A (3.4) BS01 128 7.2.2.10 GO:0000166 ... P04191 32386594
    17 6yso:A (3.13) BS01 128 7.2.2.10 GO:0000166 ... P04191 33209320
    18 6yso:B (3.13) BS01 128 7.2.2.10 GO:0000166 ... P04191 33209320
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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